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View Structure Prediction Details

Protein: rum1
Organism: Schizosaccharomyces pombe
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rum1.

Description E-value Query
Range
Subject
Range
gi|542227, gi|45... - gi|740169|prf||2004398A rum1 gene, pir||S41043 rum1 protein - fission yeast (Schizosaccharomyces pom...
367.0 [0..1] [230..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSTPPMRG LCTPSTPESP GSFKGVIDAS LEGNSSIMID EIPESDLPAP QVSTFPPTPA  60
   61 KTPKKQLLPN LMLQDRSNSL ERCMEEDREH NPFLSSSDNQ LLSRKKRKPT PPPSDGLYYV 120
  121 FRGKRIKKSF RPGTDLSTFK PKLLFADSAP SSSSDNPTSS VDLNDYSQIG ILPPNLNSIG 180
  181 NKMFSLKSRV PSSSSGSFVA PPPQMRLPAY SSPQKSRSNT KDENRHNLLR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle