YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mrps28
Organism: Schizosaccharomyces pombe
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps28.

Description E-value Query
Range
Subject
Range
gi|34500108 - gi|34500108|gb|AAQ73637.1| ribosomal protein S15 precursor-like protein [Epichloe festucae]
221.0 [0..32] [286..34]
gi|49091698, gi|... - gi|67525431|ref|XP_660777.1| hypothetical protein AN3173.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
219.0 [0..7] [287..6]
gi|85082073 - gi|85082073|ref|XP_956841.1| hypothetical protein NCU03394 [Neurospora crassa OR74A]
gi|18376366, gi|... - gi|32404078|ref|XP_322652.1| predicted protein [Neurospora crassa], gi|28917920|gb|EAA27605.1| conse...
207.0 [0..33] [287..35]
gi|18394286, gi|... - gi|8927660|gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 f...
206.0 [0..14] [280..135]
gi|46100004, gi|... - gi|71020129|ref|XP_760295.1| hypothetical protein UM04148.1 [Ustilago maydis 521], ref|XP_401763.1| ...
196.0 [0..38] [286..58]
gi|46138783, gi|... - gi|46138783|ref|XP_391082.1| hypothetical protein FG10906.1 [Gibberella zeae PH-1], gi|42551670|gb|E...
189.0 [0..33] [287..35]
gi|70999139, gi|... - gi|70999139|ref|XP_754291.1| ribosomal protein S15 [Aspergillus fumigatus Af293], gi|66851928|gb|EAL...
gi|159127308 - gi|159127308|gb|EDP52423.1| conserved hypothetical protein [Aspergillus fumigatus A1163]
188.0 [0..9] [287..8]
gi|83770784 - gi|83770784|dbj|BAE60917.1| unnamed protein product [Aspergillus oryzae]
gi|169763712 - gi|169763712|ref|XP_001727756.1| hypothetical protein [Aspergillus oryzae RIB40]
186.0 [0..8] [287..7]
gi|12005982 - gi|12005982|gb|AAG44697.1|AF265439_1 DC37 [Homo sapiens]
178.0 [0..89] [277..22]

Back

Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFEGAFQP WKLASTNLMQ QCLLLNKKSQ FHTTCILQGL KKQKANQRRK QNLKRREELR  60
   61 KQNLDTLADP IIGHSSEWIA RLLKPYEILV ERKKPNFPIR SIKFPASMET INLIVEKFEK 120
  121 IRASATEETK DFIKLNEVNE FPSSDTSLES NQDGFERLHP LAERLERMSQ LSDLRKESIH 180
  181 RIFNIENSNS KTLRLNNKQL AVESF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [206-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARNERDTGSP EVQAAVYTSR ILALSDHCKN HKKDQTGKRM LRYYVHQRQR MLKYLRKVNF  60
   61 DRYVHCIKNL GLTDELVLRE VTQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.39794
Match: 2qalO
Description: No description for 2qalO was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle