YRC Public Data Repository - Protein Structure Prediction

Protein:	rrn7
Organism:	Schizosaccharomyces pombe
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrn7.

Description	E-value	Query Range	Subject Range
gi\|39976111, gi\|... - gi\|39976111\|ref\|XP_369446.1\| hypothetical protein MG06018.4 [Magnaporthe grisea 70-15], gb\|EAA52890....	434.0	[0..7]	[452..12]
RRN7_YEAST - RNA polymerase I-specific transcription initiation factor RRN7 OS=Saccharomyces cerevisiae (strain A... gi\|190409472 - gi\|190409472\|gb\|EDV12737.1\| yeast Pol I core factor also composed of Rrn11p [Saccharomyces cerevisia... RRN7 - Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcriptio...	421.0	[0..5]	[477..4]
gi\|45184684, gi\|... - gi\|45184684\|ref\|NP_982402.1\| AAL140Cp [Ashbya gossypii ATCC 10895], gi\|44980030\|gb\|AAS50226.1\| AAL14... gi\|44980030 - gi\|44980030\|gb\|AAS50226.1\| AAL140Cp [Ashbya gossypii ATCC 10895]	415.0	[0..5]	[446..4]
gi\|27769132 - gi\|27769132\|gb\|AAH42352.1\| MGC52843 protein [Xenopus laevis]	403.0	[0..1]	[431..1]
TAF1B_MOUSE - TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Mus musculus GN=Taf1b PE=1 ...	386.0	[0..1]	[431..1]
gi\|695802, gi\|75... - pir\|\|I61581 transcription factor SL1 - human (fragment), gi\|695802\|gb\|AAA62863.1\| transcription fac...	381.0	[0..1]	[431..35]
gi\|114576227 - gi\|114576227\|ref\|XP_515295.2\| PREDICTED: hypothetical protein [Pan troglodytes]	379.0	[0..1]	[431..228]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGNWFEGPP CSVRNCKSTW YFKNAGQTFC RRGHAQHGIE IAQDDEPGAG TFYQTRKRKV  60
   61 VRNHLDTGDE DEIVYGTAGR SLYLQAFQII LQLQCQALTT KLGFDQRIEG MIRDLWALYL 120
  121 SLSYESFTSS FLSLNQNSTQ SESSDSDFDL IDPESQPGAD PSSRKTKETS QSHSISY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-351]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRLLYSSAFI YVACLLLRLP LTIHKLEVLI RKNIIPYYRA YKQIPLKIFK RLQKNYVRML  60
   61 IPFHYPTYQR IQSAVLTLVD VLVSKYELKV PPPNEPLILF ELINSFFFPL EIFIPASRLL 120
  121 NLVHSQISLQ GTSSDNYQSK IRSAQSIHEK LSDAEVMLLA TILVAANVCY GFDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [352-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQTRNSKYKD SMFTVKTNWN MWLSQVQKIN EKEKDKFYEI DEQSILTLNN SEMDKYFQWY  60
   61 EKEFVEENNP NNIPEGILNV FPILSKDSHL QENQPTDILT DESVIAEDVK LEQVFKPVGI 120
  121 KESDKMDFSR RKDAYISMLP FSPNTENTAH RVTIMVAKLY NIKLDSLIAA IRYVESCLKT 180
  181 GIHNQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits