| Protein: | rpa49 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 425 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpa49.
| Description | E-value | Query Range |
Subject Range |
|
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434.0 | [0..4] | [424..19] |
|
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433.0 | [0..1] | [424..1] |
|
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432.0 | [0..4] | [424..19] |
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431.0 | [0..1] | [424..1] |
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418.0 | [0..17] | [423..3] |
|
|
415.0 | [0..1] | [424..1] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MAGDELKGKK RKYRDSHSGD EKSVKILPLS ESSLPPLVTT ISGFYPPENT RFQLLKKSNQ 60
61 SNRDASLIGR TERVQFEAKN QSTAT
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.365 | 0.316 | DNA-directed RNA polymerase I complex | a.3.1 | Cytochrome c |
| View | Download | 0.359 | 0.023 | DNA-directed RNA polymerase I complex | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.382 | 0.015 | DNA-directed RNA polymerase I complex | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.348 | 0.009 | DNA-directed RNA polymerase I complex | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.502 | 0.006 | DNA-directed RNA polymerase I complex | a.23.4 | Mitochondrial import receptor subunit Tom20 |
|
Region A: Residues: [86-149] |
1 11 21 31 41 51
| | | | | |
1 VEANYCLAVA DKTGRVKKIV PAKYLNTFER NILALQEKDK FLKKKHGTVS GTVMEQRANL 60
61 GLAF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [150-271] |
1 11 21 31 41 51
| | | | | |
1 GTRKSQKAIM EESANRVKAE TLGDVKDQLV SNVQKATEAL PTQEDIAAAQ AQDRPIPPVN 60
61 VGAESIEDAY KLEDIIPKEE FSAIYIKPLL ENPDERNWAK LLPYRHSLFI NERFQRLLSI 120
121 EE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [272-425] |
1 11 21 31 41 51
| | | | | |
1 VDQKRARILY YISLLQAFLF SRRSVGNRET LRKKLADPPE ILIDGLIKRF TQTTGIGSVQ 60
61 VSSREVDKII CYILVLCLIV DNYSTDVLTL ANDLNVKTMK ANELFRTVGC RIMAYTETQR 120
121 MALGLNKTDA KNHKRAVLKI PLEFPKPRRG RARN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.674 | 0.474 | DNA-directed RNA polymerase I complex | a.4.1 | Homeodomain-like |
| View | Download | 0.586 | 0.033 | DNA-directed RNA polymerase I complex | a.64.1 | Saposin |
| View | Download | 0.723 | 0.020 | DNA-directed RNA polymerase I complex | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.714 | N/A | N/A | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.607 | N/A | N/A | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
