YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl13
Organism:	Schizosaccharomyces pombe
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl13.

Description	E-value	Query Range	Subject Range
gi\|74267768 - gi\|74267768\|gb\|AAI02866.1\| RPL13 protein [Bos taurus]	326.0	[0..1]	[208..1]
gi\|126631288, gi... - gi\|147900871\|ref\|NP_001091406.1\| hypothetical protein LOC100049095 [Xenopus laevis], gi\|126631288\|gb... RL13_MOUSE - 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=1 SV=3	295.0	[0..1]	[208..1]
RL13_RAT - 60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2	295.0	[0..1]	[208..1]
gi\|60653373 - gi\|60653373\|gb\|AAX29381.1\| ribosomal protein L13 [synthetic construct]	293.0	[0..1]	[208..1]
RL13_CRIGR - 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3	290.0	[0..1]	[208..1]
gi\|73956810, gi\|... - gi\|73956810\|ref\|XP_860360.1\| PREDICTED: similar to ribosomal protein L13 isoform 3 [Canis familiaris...	290.0	[0..1]	[208..1]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIHVKGQLP NAHFHKDWQR YVKTWFNQPG RKLRRRQARQ TKAAKIAPRP VEAIRPAVKP  60
   61 PTIRYNMKVR AGRGFTLEEL KAAGVSRRVA STIGIPVDHR RRNRSEESLQ RNVERIKVYL 120
  121 AHLIVFPRKA GQPKKGDATD VSGAEQTDVA AVLPITQEAV EEAKPITEEA KNFNAFSTLS 180
  181 NERAYARYAG ARAAFQKKRA EEAEAKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.60206
Match:	PF01294.9
Description:	No description for PF01294.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits