YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl102
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl102.

Description	E-value	Query Range	Subject Range
gi\|114607013 - gi\|114607013\|ref\|XP_518425.2\| PREDICTED: similar to ribosomal protein L10a [Pan troglodytes]	253.0	[0..3]	[216..144]
gi\|109070853 - gi\|109070853\|ref\|XP_001111950.1\| PREDICTED: similar to ribosomal protein L10a [Macaca mulatta]	252.0	[0..3]	[216..138]
gi\|48835066 - ref\|ZP_00292068.1\| COG0081: Ribosomal protein L1 [Thermobifida fusca] RL1_THEFY - 50S ribosomal protein L1 OS=Thermobifida fusca (strain YX) GN=rplA PE=3 SV=1	241.0	[0..2]	[215..12]
gi\|116668234, gi... - gi\|211938913\|pdb\|2JL8\|C Chain C, Insights Into Translational Termination From The Structure Of Rf2 B... RL1_THET8 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV...	238.0	[0..1]	[215..12]
gi\|28373722 - gi\|28373722\|pdb\|1ML5\|CC Chain c, Structure Of The E. Coli Ribosomal Termination Complex With Release... RL1_THETH - (P27150) 50S ribosomal protein L1 RL1_THET2 - (Q72GV9) 50S ribosomal protein L1 gi\|66361019\|pdb\|... - Chain C, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina...	238.0	[0..1]	[215..11]
RL1_THET2 - 50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=... RL1_THETH - 50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3 gi\|2120598 - pir\|\|S66577 ribosomal protein L1 - Thermus aquaticus (fragment)	238.0	[0..1]	[215..12]
RL10A_MACFA - 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3	237.0	[0..2]	[216..3]
RL1_MOOTA - 50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1	237.0	[0..4]	[215..15]
gi\|66533098 - gi\|66533098\|ref\|XP_397307.2\| PREDICTED: similar to Ribosomal protein L10Ab CG7283-PA, isoform A isof...	236.0	[0..2]	[216..3]
gi\|68365166 - gi\|68365166\|ref\|XP_696357.1\| PREDICTED: similar to Ribosomal protein L10a [Danio rerio]	236.0	[0..2]	[216..18]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVSPANIR SSVETILKGS EEKKRNFTET VELQIGLKNY DPQRDKRFSG TIKLPNVPRP  60
   61 NMSICILGDA HDLDRAKHGG VDAMSVDDLK KLNKNKKLVK KLAKKYDAFI ASEVLIKQIP 120
  121 RLLGPGLSKA GKFPSPVSHS DDLYGKIIEV KSTIKFQLKK VLCLGVAVGH VDMAEEQLAA 180
  181 NLSLAINFLV SLLKKGWQNI GSLVIKSTMG KPYRLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1s1iA
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits