YRC Public Data Repository - Protein Structure Prediction

Protein:	pts1
Organism:	Schizosaccharomyces pombe
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pts1.

Description	E-value	Query Range	Subject Range
gi\|148229628, gi... - gi\|37589390\|gb\|AAH59335.1\| MGC69086 protein [Xenopus laevis], gi\|148229628\|ref\|NP_001080028.1\| low m...	247.0	[0..6]	[264..13]
PSB8_CANLF - Proteasome subunit beta type-8 OS=Canis lupus familiaris GN=PSMB8 PE=1 SV=1	246.0	[0..28]	[265..40]
gi\|1708783, gi\|2... - pir\|\|JC5073 proteasome epsilon chain precursor - Geodia cydonium, gi\|1708783\|emb\|CAA66312.1\| LMP7-li...	245.0	[0..3]	[264..15]
gi\|18157533 - gi\|18157533\|dbj\|BAB83848.1\| PSMB8-A [Oryzias latipes]	245.0	[0..29]	[262..42]
gi\|151942879 - gi\|151942879\|gb\|EDN61225.1\| proteasome subunit [Saccharomyces cerevisiae YJM789] PSB5_YEAST - Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRE2 PE=1... gi\|190408030 - gi\|190408030\|gb\|EDV11295.1\| proteasome subunit [Saccharomyces cerevisiae RM11-1a] PRE2 - Beta 5 subunit of the 20S proteasome, responsible for the chymotryptic activity of the proteasome	245.0	[0..2]	[270..12]
PSB8_RAT - Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3	244.0	[0..28]	[263..40]
gi\|4545092, gi\|4... - gi\|47522620\|ref\|NP_999100.1\| proteasome beta 8 subunit [Sus scrofa], gi\|4545092\|gb\|AAD22390.1\|AF0594...	244.0	[0..22]	[263..18]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIVSKYTQ STNNDDPKKI IEEEGFTNRF DVVPVPQSSL YLRNLTDETK NKHCLIKMNH  60
   61 GTTTLAFRYQ HGIVVCVDSR ASAGPLIASQ TVKKVIEINP YLLGTLAGGA ADCQFWETVL 120
  121 GMECRLHQLR NKELISVSAA SKILSNITYS YKGYGLSMGT MLAGTGKGGT ALYYIDSDGT 180
  181 RLKGDLFSVG SGSTFAYGVL DSGYRWDLSK QEALYLAQRS IVAATHRDAY SGGSVNLYHI 240
  241 DENGWVFHGN FDVDSLIWEA KDNENSFAHI PR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	1g0uK
Description:	Proteasome beta subunit (catalytic)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits