YRC Public Data Repository - Protein Structure Prediction

Protein:	pmp1
Organism:	Schizosaccharomyces pombe
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmp1.

Description	E-value	Query Range	Subject Range
gi\|37606086 - gi\|37606086\|emb\|CAE49757.1\| novel protein similar to human slingshot 1 (SSH1) [Danio rerio]	178.0	[0..8]	[276..217]
gi\|73953410 - gi\|73953410\|ref\|XP_546235.2\| PREDICTED: similar to Dual specificity protein phosphatase 1 (MAP kinas...	176.0	[0..11]	[272..128]
gi\|114603388, gi... - gi\|114603390\|ref\|XP_527120.2\| PREDICTED: dual specificity phosphatase 1 isoform 2 [Pan troglodytes],... gi\|208966164 - gi\|208966164\|dbj\|BAG73096.1\| dual specificity phosphatase 1 [synthetic construct] DUSP1 - dual specificity phosphatase 1	176.0	[0..11]	[272..128]
gi\|60654361 - gi\|60654361\|gb\|AAX29871.1\| dual specificity phosphatase 1 [synthetic construct]	176.0	[0..11]	[272..128]
gi\|109079769 - gi\|109079769\|ref\|XP_001096004.1\| PREDICTED: dual specificity phosphatase 1 [Macaca mulatta]	175.0	[0..11]	[272..128]
DUS4_CHICK - Dual specificity protein phosphatase 4 OS=Gallus gallus GN=DUSP4 PE=2 SV=1	173.0	[0..11]	[272..134]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKLPPLKI YTSQLPLVSH KNMLENEEEA SHSQLFTPCP VPPSFPKASK PNSNQPYPNG  60
   61 PVCIYPPNIY LYAKPTMPII QSFDVVINVA KEVLHPFRTD GRHYRDSKHN LDIQVFDHIE 120
  121 YVHIHWDHDT QFALELDKLV SFVAYNAMQL NKKVLINCQM GISRSACLMI AFIMKTLNLN 180
  181 VSDAYEYVKE RSPWIGPNMS LIFQLSEYQQ IIRKNSSQGP YQSSSLKQSK RKSEGNLLFP 240
  241 EKPHSAQLPL VSPSTSESSM FTNLRRTRSS GSISNDAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2j16A
Description:	No description for 2j16A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits