YRC Public Data Repository - Protein Structure Prediction

Protein:	pmc4
Organism:	Schizosaccharomyces pombe
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmc4.

Description	E-value	Query Range	Subject Range
MED4_ASHGO - Mediator of RNA polymerase II transcription subunit 4 OS=Ashbya gossypii GN=MED4 PE=3 SV=1 MED4_ASHGO - Mediator of RNA polymerase II transcription subunit 4 OS=Ashbya gossypii (strain ATCC 10895 / CBS 10...	267.0	[0..2]	[235..58]
MED4_CANAL - Mediator of RNA polymerase II transcription subunit 4 OS=Candida albicans (strain SC5314 / ATCC MYA-... MED4_CANAL - Mediator of RNA polymerase II transcription subunit 4 OS=Candida albicans GN=MED4 PE=3 SV=1	254.0	[0..2]	[236..85]
MED4_CANGA - Mediator of RNA polymerase II transcription subunit 4 OS=Candida glabrata GN=MED4 PE=3 SV=1 MED4_CANGA - Mediator of RNA polymerase II transcription subunit 4 OS=Candida glabrata (strain ATCC 2001 / CBS 13...	183.0	[0..3]	[235..29]
gi\|151945791 - gi\|151945791\|gb\|EDN64032.1\| mediator complex subunit [Saccharomyces cerevisiae YJM789] gi\|190407490 - gi\|190407490\|gb\|EDV10757.1\| RNA polymerase II mediator complex subunit 4 [Saccharomyces cerevisiae R... MED4_YEAST - Mediator of RNA polymerase II transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 20450... MED4 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...	180.0	[0..3]	[163..49]
MED4_DEBHA - Mediator of RNA polymerase II transcription subunit 4 - Debaryomyces hansenii (Yeast) (Torulaspora h... gi\|50425521, gi\|... - gi\|50425521\|ref\|XP_461356.1\| hypothetical protein DEHA0F24750g [Debaryomyces hansenii CBS767], gi\|49...	154.0	[0..2]	[239..92]
MED4_KLULA - Mediator of RNA polymerase II transcription subunit 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CB... MED4_KLULA - Mediator of RNA polymerase II transcription subunit 4 OS=Kluyveromyces lactis GN=MED4 PE=3 SV=1	140.0	[0..3]	[235..44]
gi\|39972267, gi\|... - gi\|39972267\|ref\|XP_367524.1\| hypothetical protein MGG_07435 [Magnaporthe grisea 70-15], gb\|EAA53158....	140.0	[0..6]	[126..19]
MED4_YARLI - Mediator of RNA polymerase II transcription subunit 4 OS=Yarrowia lipolytica (strain CLIB 122 / E 15... MED4_YARLI - Mediator of RNA polymerase II transcription subunit 4 OS=Yarrowia lipolytica GN=MED4 PE=3 SV=1	137.0	[0..3]	[152..112]
gi\|40743345, gi\|... - gi\|67538410\|ref\|XP_662979.1\| hypothetical protein AN5375.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	136.0	[0..3]	[238..12]
gi\|85107990 - gi\|85107990\|ref\|XP_962487.1\| hypothetical protein NCU07329 [Neurospora crassa OR74A] gi\|32414271, gi\|... - gi\|32414271\|ref\|XP_327615.1\| predicted protein [Neurospora crassa], gi\|28924094\|gb\|EAA33251.1\| predi...	136.0	[0..7]	[143..20]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYQRAIDSI EECLNKQLRL SSEKVDQYVL IENWTSLVGH LKTLHSLISN YTNGRELQNE  60
   61 ISSLLKQDKE LDLQIQDCMR EMTSIYDTHL PKTVSGRKRQ KVNAETLLDY GRKLSKFSSA 120
  121 PPGYNPETGQ DAKAPVHYPW PSEDQMRKTL LFQFSTSMVP NLSATASQLF SEQPPKTNEP 180
  181 TETETEIDAN KAVEEKTKMN YPASPTFTTQ EENKEVESPA NKDVFAGFDL FDPEMEEDF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits