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View Structure Prediction Details

Protein: php5
Organism: Schizosaccharomyces pombe
Length: 415 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for php5.

Description E-value Query
Range
Subject
Range
gi|14577940 - gi|14577940|gb|AAK68863.1| CCAAT-binding protein subunit HAP5 [Hypocrea jecorina]
181.0 [0..32] [301..2]
gi|3059251 - gi|3059251|dbj|BAA25636.1| HAPE [Aspergillus oryzae]
gi|220694864, gi... - gi|238493956|ref|XP_002378214.1| CCAAT-binding factor complex subunit HapE [Aspergillus flavus NRRL3...
181.0 [0..37] [301..15]
gi|32967225 - gi|32967225|gb|AAP92405.1| HapE [Aspergillus niger]
180.0 [0..32] [301..2]
gi|85084036 - gi|85084036|ref|XP_957240.1| hypothetical protein ( (AF026550) CCAAT-binding transcription factor su...
gi|32403178, gi|... - gi|32403178|ref|XP_322202.1| hypothetical protein ( (AF026550) CCAAT-binding transcription factor su...
177.0 [0..32] [301..2]
gi|26347857 - gi|26347857|dbj|BAC37577.1| unnamed protein product [Mus musculus]
176.0 [0..55] [250..5]
gi|67540644, gi|... - gi|67540644|ref|XP_664096.1| hypothetical protein AN6492.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
174.0 [0..39] [302..17]
NFYB_CHICK - Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2
173.0 [0..55] [260..3]
gi|159122333 - gi|159122333|gb|EDP47454.1| CCAAT-binding factor complex subunit HapE [Aspergillus fumigatus A1163]
gi|66845174, gi|... - gi|70984052|ref|XP_747547.1| CCAAT-binding factor complex subunit HapE [Aspergillus fumigatus Af293]...
171.0 [0..37] [302..15]
gi|46111453, gi|... - gi|46111453|ref|XP_382784.1| hypothetical protein FG02608.1 [Gibberella zeae PH-1], gi|42544585|gb|E...
170.0 [0..34] [301..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIPDSYSL KQGFPEGLGE YVDPSGNPNS QVRIGYGQDS VSRFQQPVPD VDPTAVNHYN  60
   61 ASAPIEVASP FDNVTQGLVG SDAQALAEYW QKTIDTL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.369 a.60.14 Description not found.
View Download 0.290 a.4.5 "Winged helix" DNA-binding domain
View Download 0.284 a.60.14 Description not found.
View Download 0.260 a.134.1 Fungal elicitin
View Download 0.248 c.47.1 Thioredoxin-like
View Download 0.240 a.134.1 Fungal elicitin
View Download 0.235 d.120.1 Cytochrome b5
View Download 0.233 a.60.8 HRDC-like
View Download 0.231 a.181.1 Antibiotic binding domain of TipA-like multidrug resistance regulators

Predicted Domain #2
Region A:
Residues: [98-199]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHDDQAVKTL HLPLARIKKV MKTDDDVKNK MISAEAPFLF AKGSEIFIAE LTMRAWLHAK  60
   61 KNQRRTLQRS DIANAVSKSE MYDFLIDIIS KDNNNSRASS SQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 1n1jB
Description: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [200-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHMSATQVAA MGGMNGLQPF PTQAGLPNQG FPMPTGSQLP FSNQQSSQPS MQYSSHPSRM  60
   61 QQMQDIDQSM YKQQRLGSEY PQLQMSDNSG NVNQMNMQRP VMVAPYMAEH LYRYPPTHLE 120
  121 SGSSAFRLQS SPMGYQMPQF QGNMRPNMQQ SQMFDPSAYG MSRRPGSPRQ FDQQQRLYSQ 180
  181 PNAMMYQTQQ GRQGNPMHQQ FSQQQNPLSR YSQQPQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle