| Protein: | pds5 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1205 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pds5.
| Description | E-value | Query Range |
Subject Range |
|
|
863.0 | [0..17] | [1202..200] |
|
|
859.0 | [0..17] | [1202..105] |
|
|
852.0 | [0..17] | [1202..65] |
|
|
850.0 | [0..17] | [1202..61] |
|
|
847.0 | [0..17] | [1202..25] |
|
Region A: Residues: [1-60] |
1 11 21 31 41 51
| | | | | |
1 MIKLQFQRNI VPTHDNPLTT SEILKRLRDL LGELTSLSQD TIDRDSVLPV ARSLVNNNLL 60
61
|
| Detection Method: |  |
| Confidence: | 67.154902 |
| Match: | 1b3uA |
| Description: | Constant regulatory domain of protein phosphatase 2a, pr65alpha |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [61-532] |
1 11 21 31 41 51
| | | | | |
1 HHKDKGIRSY TLCCIVELLR LCAPDAPFTL SQLEDIFQVI LKILSGLMNQ ESTYYPQIYE 60
61 ILESLSNVKS AVLIVDLPNA EEFLVNIFRL FFDLARKGTT KNVEFYMLDI INQLINEINT 120
121 IPAAALNILF AQLISGKGVR QTIGSSDSTN HGPAFQLARN IFHDSADRLQ RYVCQYFSDI 180
181 IFDSRDSLSD SMTTPEFIFS HNLVLQLWKY APTTLLNIIP QFENELQAEQ TSVRLVAIET 240
241 VGLMLQDNAI WSDYPRVWSA FCGRLNDKSV ACRIKCIEVA SNALQNSLAT SEIIENVVQM 300
301 LQSKLADTDE KVRVATLKTI EQLTFETFKM QFSVQALKLM GDRLRDRKLN VRLQAIRTLS 360
361 QIYNRAYQDL IDGVEYSIQM FSWIPSSLLE VFYVNDETTN AAVEICMAEL VLQYLSSDTQ 420
421 TRLNRLFLSI KYFSEKAMRV FILLLQRQVK YSELLNYYIE CCKNYNGGVM DN
|
| Detection Method: | |
| Confidence: | 28.69897 |
| Match: | 1u6gC |
| Description: | Crystal Structure of The Cand1-Cul1-Roc1 Complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [533-688] |
1 11 21 31 41 51
| | | | | |
1 DEESITNKLK KVIDIISSKS SNPTLTEATF RKFAELNDRQ SYKMLLQTFS IKSEYQVVLK 60
61 SIKYLFKRVS ETLSTASLEC FRIFVYRSAL FAFNKSNVHE IIQLLNEPVK YHNFLKPSEA 120
121 LLQHLPLIHP NIYGEVVIEV ENIIVSSGIE SDPKVI
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 2c1tA |
| Description: | Structure of the Kap60p:Nup2 complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [689-811] |
1 11 21 31 41 51
| | | | | |
1 KALSQFSKRK KNFSIQTTTA EILRKLCLHG TQEQAKQAAT IIAITETKEF KLDMITNIVE 60
61 NLEYNGGLPV RLMTLGQLFL YTLEEVEKVA DQVTEFLVKK VIQRFPEKYD DTHNDEEWCT 120
121 YEK
|
| Detection Method: | |
| Confidence: | 76.69897 |
| Match: | 1w63B |
| Description: | AP1 clathrin adaptor core |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [812-908] |
1 11 21 31 41 51
| | | | | |
1 LDNLTMCKVL AIRVLVNRLR AAAGGTEALN IGAPIIKLLK VLLMADGELS PFKNTPKISR 60
61 AYLRLTASKY FLKLCSIPFY AEHIDFSSYV QISLLCQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [909-1090] |
1 11 21 31 41 51
| | | | | |
1 DENFDVRNLF LTKLQKQLQL KKLPISYYPL LFLTAVDPEE EIKTKASIWI RSQVAFFQKT 60
61 HDFTMEYVAT YLIHLLSHHP DISSIESENS LDFIAYIRFY VDTVVNSENV PIVFHLMQRI 120
121 KQSYDVIEDG NNYIYVLSDM AQKILQVKSQ NFGWSLTTYP KQIKLPYEIL RPIPSIDEKK 180
181 RI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1091-1205] |
1 11 21 31 41 51
| | | | | |
1 FNKIFITPKM ESQIEHAIRT PVSSFAKQTT NKHANLKQKK THSSKSDKKS SRRRKNEKRR 60
61 KLNEQNPNIR NVPERSSSRF QGIRINYSEA PSSSEEISEE EEEISEEDFD EIEDL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
