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View Structure Prediction Details

Protein: pcr1
Organism: Schizosaccharomyces pombe
Length: 171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcr1.

Description E-value Query
Range
Subject
Range
gi|90110448 - gi|90110448|gb|ABD90526.1| class III homeodomain-leucine zipper [Ginkgo biloba]
116.0 [0..10] [164..58]
gi|24417147 - gi|24417147|dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans]
113.0 [0..10] [164..60]
gi|63095203 - gi|63095203|gb|AAY32332.1| HB1 [Phyllostachys praecox]
112.0 [0..10] [164..53]
HOX9_ORYSJ - Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica GN=HOX9 PE=2 SV=1
111.0 [0..10] [164..70]
gi|89514873 - gi|89514873|gb|ABD75311.1| class III homeodomain-leucine zipper protein C3HDZ1 [Taxus globosa]
111.0 [0..10] [164..55]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAKKKEVDD EKRRRILERN RIAASKFRQK KKEWIKELEQ TANAAFEQSK RLQLLLSQLQ  60
   61 QEAFRLKSQL LAHQGCQCSV KIRSVLTDFQ TAHNALHSQH MAYRPVQPPP GDNMLESVVS 120
  121 VSPTQMHPSL QGLPPNQHPQ MPPSSQQPNS DDVQQHMFSA AGLPRSLGGP I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle