YRC Public Data Repository - Protein Structure Prediction

Protein:	oxa102
Organism:	Schizosaccharomyces pombe
Length:	409 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oxa102.

Description	E-value	Query Range	Subject Range
gi\|84318222 - gi\|84318222\|ref\|ZP_00966649.1\| COG0706: Preprotein translocase subunit YidC [Pseudomonas aeruginosa ...	359.0	[0..2]	[314..274]
gi\|2739285, gi\|1... - gi\|2739285\|emb\|CAA63844.1\| oxa1Sp2 [Schizosaccharomyces pombe], pir\|\|T43703 respiratory protein oxa1...	359.0	[0..1]	[409..1]
YIDC_PSEA7 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain PA7) GN=yidC PE=3 SV=1	359.0	[0..2]	[314..281]
YIDC_PSEAB - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=yidC PE=3 SV=1 YIDC_PSEA8 - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain LESB58) GN=yidC PE=3 SV=1	358.0	[0..2]	[314..281]
gi\|107104669 - gi\|107104669\|ref\|ZP_01368587.1\| hypothetical protein PaerPA_01005748 [Pseudomonas aeruginosa PACS2]	358.0	[0..2]	[314..281]
YIDC_PSEAE - Membrane protein insertase YidC OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /... OXAA_PSEAE - Inner membrane protein oxaA OS=Pseudomonas aeruginosa GN=oxaA PE=3 SV=1	358.0	[0..2]	[314..281]
gi\|23104609 - ref\|ZP_00091071.1\| COG0706: Preprotein translocase subunit YidC [Azotobacter vinelandii] YIDC_AZOVD - Membrane protein insertase YidC OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=yidC PE=3 S...	354.0	[0..5]	[318..263]
YIDC_PSEU2 - Membrane protein insertase YidC OS=Pseudomonas syringae pv. syringae (strain B728a) GN=yidC PE=3 SV=...	351.0	[0..3]	[321..265]
YIDC_PSE14 - Membrane protein insertase YidC OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) G...	351.0	[0..3]	[322..265]
YIDC_PSEPU - Membrane protein insertase YidC OS=Pseudomonas putida GN=yidC PE=3 SV=1 tr\|I7C0X3\|I7C0X3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain DOT-T1E) GN=yidC PE=3 SV=1 YIDC_PSEPK - Membrane protein insertase YidC OS=Pseudomonas putida (strain KT2440) GN=yidC PE=3 SV=1 tr\|E4R9L3\|E4R9L3... - Membrane protein insertase YidC OS=Pseudomonas putida (strain BIRD-1) GN=oxaA PE=3 SV=1	350.0	[0..3]	[322..262]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVIGRGIK FSSKSHYSVS CFLIATQGAK IRQIHTHNTF FKNFSFAKLG RNQRTSSLIK  60
   61 IHNSSTSFPK SRSEKVVYTP SLPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSVLASFSF LPHNILQNGL NTLHIWSGLP WWASIAACAV AMRIAVFPIM LKMMKTSAKL  60
   61 AIINPKVAEH MSVLSKAKAE GNSELMMQAT TQIQNLYKVN NVNPLNLLSA PVFQGILFIS 120
  121 FFYALKTMAG VPVEGFTDGG FWWVNDLSQP DPLHIFPVAN GLLMLLNIEL GSETGSNKVA 180
  181 MSPSMKKFFR FLCLASPLFT MNFPMAIFMY WFPSNVFSVF QGAFLRSSTI RHKLGLPEVP 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.853872
Match:	PF02096.11
Description:	No description for PF02096.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [325-409]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAMPVPNAQN ESFVKSFTDI VHGVQEKGKY PQASEILDAT RFLKTDTNNE QKPTNNSTIT  60
   61 KATTLSDNSQ NDKSSSVTKP TEKKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits