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View Structure Prediction Details

Protein: mfr1
Organism: Schizosaccharomyces pombe
Length: 421 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mfr1.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
388.0 [0..8] [420..1181]
gi|75701503, gi|... - gi|75907778|ref|YP_322074.1| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...
377.0 [0..8] [420..1095]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
370.0 [0..6] [420..1039]
gi|37523925, gi|... - gi|37523925|ref|NP_927302.1| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi|35214...
366.0 [0..8] [420..704]
gi|17225204 - gi|17225204|gb|AAL37298.1|AF323582_1 beta transducin-like protein HET-E2C [Podospora anserina]
360.0 [0..8] [417..850]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDRFIPIRN VSNEFNFSFQ SFKECVLSHG SNLRRKTSGT IQRQFMELLS MELFGSQASR  60
   61 SRAFYYGEDK RKIEKKMLDT PDRKSYSLSP ISPQSQDMLR QP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-421]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKPKRAFPKT PYKILDAPYL KNDFYLNLLD WGQSNVLAVG LASSIYLWSA ASGKVVQLHD  60
   61 FGATNHVTSV LWTGKGTQLA VGTDSGVIYI WDIESTKSVR SLKGHSERVA ALAWNDNTLT 120
  121 SGGKDEVILH HDLRAPGCCA EMMKVHEQEI CGLQWDRSLG QLASGGNDNN LFVWDYRSSR 180
  181 PLHKFEEHTA AVKAIGWSPH QRGILASGGG TIDRCLTIHN TLTGRLQNKL DTGSQVCNMA 240
  241 WSKTSNEIVT THGFAKNQVS LWKYPSLKNI ANLTAHTNRV LYLSMSPDGQ SIVTGAGDET 300
  301 LRFWKLFNKK PKEESTLIR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle