YRC Public Data Repository - Protein Structure Prediction

Protein:	mdm12
Organism:	Schizosaccharomyces pombe
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdm12.

Description	E-value	Query Range	Subject Range
gi\|1654330 - gi\|1654330\|gb\|AAB17867.1\| mitochondrial inheritance component Mdm12p [Saccharomyces cerevisiae]	303.0	[0..1]	[273..1]
gi\|83766053 - gi\|83766053\|dbj\|BAE56196.1\| unnamed protein product [Aspergillus oryzae] gi\|169767454 - gi\|169767454\|ref\|XP_001818198.1\| hypothetical protein [Aspergillus oryzae RIB40]	270.0	[0..1]	[271..1]
MDM12_CANAL - Mitochondrial distribution and morphology protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2... MDM12_CANAL - Mitochondrial distribution and morphology protein 12 OS=Candida albicans GN=MDM12 PE=3 SV=1	256.0	[0..43]	[272..134]
gi\|1827502 - gi\|1827502\|dbj\|BAA12181.1\| unnamed protein product [Schizosaccharomyces pombe]	246.0	[0..1]	[198..1]
gi\|46105324, gi\|... - gi\|46105324\|ref\|XP_380466.1\| hypothetical protein FG00290.1 [Gibberella zeae PH-1], gi\|42546857\|gb\|E...	238.0	[0..76]	[271..2711]
MDM12_ASHGO - Mitochondrial distribution and morphology protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109... MDM12_ASHGO - Mitochondrial distribution and morphology protein 12 OS=Ashbya gossypii GN=MDM12 PE=3 SV=1	213.0	[0..116]	[273..51]
MDM12_CANGA - Mitochondrial distribution and morphology protein 12 OS=Candida glabrata GN=MDM12 PE=3 SV=1 MDM12_CANGA - Mitochondrial distribution and morphology protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS 138...	208.0	[0..1]	[273..1]
MDM12_ASPFC - Mitochondrial distribution and morphology protein 12 OS=Neosartorya fumigata (strain CEA10 / CBS 144... MDM12_ASPFU - Mitochondrial distribution and morphology protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609 /... MDM12_ASPFU - Mitochondrial distribution and morphology protein 12 OS=Aspergillus fumigatus GN=mdm12 PE=3 SV=1	207.0	[0..76]	[271..201]
MDM12_USTMA - Mitochondrial distribution and morphology protein 12 OS=Ustilago maydis GN=MDM12 PE=3 SV=1 MDM12_USTMA - Mitochondrial distribution and morphology protein 12 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=...	206.0	[0..68]	[273..231]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDFDWSKL DSELEAKVLH LLEGQVSNLS LPSYIKHLKV VDFHFGKVSP QITIQEIGDP  60
   61 DPQFYENEAF ELANQELEGD QCSRNNVSPV LTDLPPYAAE HPFSRLAYFN PAFNSPGILS 120
  121 ASGLTSPIPE S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.458	0.264	mitochondrial genome maintenance	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.584	0.096	mitochondrial genome maintenance	a.118.8	TPR-like
View	Download	0.582	0.068	mitochondrial genome maintenance	a.96.1	DNA-glycosylase
View	Download	0.440	0.010	mitochondrial genome maintenance	a.7.5	Tubulin chaperone cofactor A
View	Download	0.491	N/A	N/A	a.118.8	TPR-like

Predicted Domain #2

Region A:
Residues: [132-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPSTPMDNHQ ERDRSNDFQV TAHVSYDGDA NLSLEAVLSM NYPNSEFAVL PFKLSFIRIS  60
   61 IDAIAVLAKM GKRTHLCFVD TLLHGTGEHA SSVIRDLTVE SIIGESNKQL LKNVAKVEKF 120
  121 VSEKVKRIIE DELVWPSYIT IE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits