YRC Public Data Repository - Protein Structure Prediction

Protein:	lys3
Organism:	Schizosaccharomyces pombe
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys3.

Description	E-value	Query Range	Subject Range
gi\|152025747, gi... - gi\|89201590\|ref\|ZP_01180328.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Bacil...	398.0	[0..4]	[363..1]
gi\|206977176, gi... - gi\|206977176\|ref\|ZP_03238075.1\| alanine dehydrogenase [Bacillus cereus H3081.97], gi\|206744661\|gb\|ED... gi\|217065672, gi... - gi\|217962105\|ref\|YP_002340675.1\| alanine dehydrogenase [Bacillus cereus AH187], gi\|217065672\|gb\|ACJ7... gi\|221242147, gi... - gi\|222098089\|ref\|YP_002532146.1\| alanine dehydrogenase [Bacillus cereus Q1], gi\|221242147\|gb\|ACM1485... gi\|42739734, gi\|... - gi\|42783804\|ref\|NP_981051.1\| alanine dehydrogenase [Bacillus cereus ATCC 10987], gi\|42739734\|gb\|AAS4... gi\|47505314, gi\|... - gi\|47530166\|ref\|YP_021515.1\| alanine dehydrogenase [Bacillus anthracis str. 'Ames Ancestor'], gi\|475... gi\|21402669, gi\|... - gi\|65321993\|ref\|ZP_00394952.1\| COG0686: Alanine dehydrogenase [Bacillus anthracis str. A2012], ref\|N... gi\|254757463 - gi\|254757463\|ref\|ZP_05209490.1\| alanine dehydrogenase [Bacillus anthracis str. Australia 94] gi\|30264697, gi\|... - gi\|30264697\|ref\|NP_847074.1\| alanine dehydrogenase [Bacillus anthracis str. Ames], gi\|30259372\|gb\|AA... gi\|254754631 - gi\|254754631\|ref\|ZP_05206666.1\| alanine dehydrogenase [Bacillus anthracis str. Vollum] gi\|254741771 - gi\|254741771\|ref\|ZP_05199458.1\| alanine dehydrogenase [Bacillus anthracis str. Kruger B] gi\|47565038, gi\|... - gi\|47565038\|ref\|ZP_00236081.1\| alanine dehydrogenase [Bacillus cereus G9241], gi\|47557824\|gb\|EAL1614... gi\|254736734 - gi\|254736734\|ref\|ZP_05194440.1\| alanine dehydrogenase [Bacillus anthracis str. Western North America... gi\|254724997 - gi\|254724997\|ref\|ZP_05186780.1\| alanine dehydrogenase [Bacillus anthracis str. A1055] gi\|254687434 - gi\|254687434\|ref\|ZP_05151290.1\| alanine dehydrogenase [Bacillus anthracis str. CNEVA-9066] gi\|229267564, gi... - gi\|229603156\|ref\|YP_002868906.1\| alanine dehydrogenase [Bacillus anthracis str. A0248], gi\|229267564... gi\|228584714, gi... - gi\|229198781\|ref\|ZP_04325477.1\| Alanine dehydrogenase [Bacillus cereus m1293], gi\|228584714\|gb\|EEK42... gi\|229186883, gi... - gi\|229186883\|ref\|ZP_04314038.1\| Alanine dehydrogenase [Bacillus cereus BGSC 6E1], gi\|228596620\|gb\|EE... gi\|228625189, gi... - gi\|229158231\|ref\|ZP_04286298.1\| Alanine dehydrogenase [Bacillus cereus ATCC 4342], gi\|228625189\|gb\|E... gi\|52140883, gi\|... - gi\|52140883\|ref\|YP_085946.1\| alanine dehydrogenase [Bacillus cereus E33L], gi\|51974352\|gb\|AAU15902.1... gi\|228642132, gi... - gi\|229141351\|ref\|ZP_04269889.1\| Alanine dehydrogenase [Bacillus cereus BDRD-ST26], gi\|228642132\|gb\|E... gi\|229124193, gi... - gi\|229124193\|ref\|ZP_04253385.1\| Alanine dehydrogenase [Bacillus cereus 95/8201], gi\|228659495\|gb\|EEL... gi\|49181442, gi\|... - gi\|49187515\|ref\|YP_030768.1\| alanine dehydrogenase [Bacillus anthracis str. Sterne], gi\|49181442\|gb\|... gi\|228689604, gi... - gi\|229093719\|ref\|ZP_04224818.1\| Alanine dehydrogenase [Bacillus cereus Rock3-42], gi\|228689604\|gb\|EE... gi\|49481351, gi\|... - gi\|49481351\|ref\|YP_038672.1\| alanine dehydrogenase [Bacillus thuringiensis serovar konkukian str. 97... gi\|228771921, gi... - gi\|228987873\|ref\|ZP_04147982.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar tochigiensis B... gi\|228935933, gi... - gi\|228935933\|ref\|ZP_04098743.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar andalousiensis... gi\|228830063, gi... - gi\|228929676\|ref\|ZP_04092694.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar pondicheriensi... gi\|228923370, gi... - gi\|228923370\|ref\|ZP_04086658.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar huazhongensis ... gi\|228917266, gi... - gi\|228917266\|ref\|ZP_04080823.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGS... gi\|227817413, gi... - gi\|227817413\|ref\|YP_002817422.1\| alanine dehydrogenase [Bacillus anthracis str. CDC 684], gi\|2270047... gi\|225866605, gi... - gi\|225866605\|ref\|YP_002751983.1\| alanine dehydrogenase [Bacillus cereus 03BB102], gi\|225788156\|gb\|AC... gi\|118479767, gi... - gi\|118479767\|ref\|YP_896918.1\| L-alanine dehydrogenase [Bacillus thuringiensis str. Al Hakam], gi\|118... gi\|167513969, gi... - gi\|167638152\|ref\|ZP_02396430.1\| alanine dehydrogenase [Bacillus anthracis str. A0193], gi\|167513969\|... gi\|170670131, gi... - gi\|170685667\|ref\|ZP_02876890.1\| alanine dehydrogenase [Bacillus anthracis str. A0465], gi\|170670131\|... gi\|170705585, gi... - gi\|170705585\|ref\|ZP_02896049.1\| alanine dehydrogenase [Bacillus anthracis str. A0389], gi\|170129710\|... gi\|177651284, gi... - gi\|177651284\|ref\|ZP_02934115.1\| alanine dehydrogenase [Bacillus anthracis str. A0174], gi\|172083110\|... gi\|190569064, gi... - gi\|190569064\|ref\|ZP_03021964.1\| alanine dehydrogenase [Bacillus anthracis Tsiankovskii-I], gi\|190559... gi\|196033196, gi... - gi\|196033196\|ref\|ZP_03100609.1\| alanine dehydrogenase [Bacillus cereus W], gi\|195994625\|gb\|EDX58580.... gi\|196040895, gi... - gi\|196040895\|ref\|ZP_03108193.1\| alanine dehydrogenase [Bacillus cereus NVH0597-99], gi\|196028349\|gb\|... gi\|196047481, gi... - gi\|196047481\|ref\|ZP_03114692.1\| alanine dehydrogenase [Bacillus cereus 03BB108], gi\|196021696\|gb\|EDX... gi\|165869848, gi... - gi\|165869848\|ref\|ZP_02214506.1\| alanine dehydrogenase [Bacillus anthracis str. A0488], gi\|164714677\|... gi\|167530711, gi... - gi\|167633910\|ref\|ZP_02392233.1\| alanine dehydrogenase [Bacillus anthracis str. A0442], gi\|167530711\|...	395.0	[0..4]	[363..1]
gi\|75759987, gi\|... - gi\|75759987\|ref\|ZP_00740055.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar israelensis ATC...	395.0	[0..4]	[363..1]
gi\|228614113, gi... - gi\|229169350\|ref\|ZP_04297060.1\| Alanine dehydrogenase [Bacillus cereus AH621], gi\|228614113\|gb\|EEK71... gi\|229135460, gi... - gi\|229135460\|ref\|ZP_04264247.1\| Alanine dehydrogenase [Bacillus cereus BDRD-ST196], gi\|228648021\|gb\|... gi\|163864552, gi... - gi\|89204121\|ref\|ZP_01182699.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Bacil...	394.0	[0..4]	[363..1]
gi\|30022698, gi\|... - gi\|30022698\|ref\|NP_834329.1\| alanine dehydrogenase [Bacillus cereus ATCC 14579], gi\|29898257\|gb\|AAP1... gi\|229129906, gi... - gi\|229129906\|ref\|ZP_04258872.1\| Alanine dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228653597\|gb\|E...	394.0	[0..4]	[363..1]
gi\|123187387 - gi\|123187387\|gb\|ABM69270.1\| alanine dehydrogenase [Geobacillus stearothermophilus] gi\|56421287, gi\|... - gi\|56421287\|ref\|YP_148605.1\| alanine dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381129\|db...	393.0	[0..4]	[363..1]
DHA_BACSU - Alanine dehydrogenase OS=Bacillus subtilis GN=ald PE=3 SV=1 gi\|221324661 - gi\|221324661\|ref\|ZP_03605955.1\| L-alanine dehydrogenase [Bacillus subtilis subsp. subtilis str. SMY] DHA_BACSU - Alanine dehydrogenase OS=Bacillus subtilis (strain 168) GN=ald PE=1 SV=1 gi\|221320377 - gi\|221320377\|ref\|ZP_03601671.1\| L-alanine dehydrogenase [Bacillus subtilis subsp. subtilis str. JH64... gi\|221315461 - gi\|221315461\|ref\|ZP_03597266.1\| L-alanine dehydrogenase [Bacillus subtilis subsp. subtilis str. NCIB...	389.0	[0..4]	[363..1]
gi\|113970298, gi... - gi\|113970298\|ref\|YP_734091.1\| L-alanine dehydrogenase [Shewanella sp. MR-4], gi\|113884982\|gb\|ABI3903... gi\|113888953, gi... - gi\|114047511\|ref\|YP_738061.1\| L-alanine dehydrogenase [Shewanella sp. MR-7], gi\|113888953\|gb\|ABI4300...	389.0	[0..4]	[363..1]
DHA2_STAAR - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=ald2 PE=3 SV=1	389.0	[0..4]	[353..1]

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Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAPHLWLRA ETKPLEERSA LTPRTAKILA DAGFQITIER SSQRAFKDKE FERLGFPMVP  60
   61 EGSWRHAPKD AYIIGLKELP ENDNSPLKHT HIQFAHCYKN QEGWREVLSR FPAGNGLLYD 120
  121 LEFLQDDNGR RVAAFGYHAG FAGSAISCLV WAHQLLHPNK QFPAIRPFPN EKSLVRHVAR 180
  181 QVRLALKKNN NQYPRILVIG ALGRCGTGAC DLASKIGIPF DNILRWDINE TKKGGPFTEI 240
  241 TESDIFVNCI YLSMPIPKFC TVESLNVPNR KLRVVCDVSC DTTNPNNPIP IYNVNTTFDH 300
  301 PTVEVKGVTT PPPLEVISID HLPTLLPRES SEAFSEALIP SLLALKDVDN APVWVRAKKL 360
  361 YETMVQKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2eezA
Description:	No description for 2eezA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits