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View Structure Prediction Details

Protein: SPBC1271.15c
Organism: Schizosaccharomyces pombe
Length: 686 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1271.15c.

Description E-value Query
Range		 Subject
Range
gi|3850753 - gi|3850753|emb|CAA05699.1| Initiation factor IF2-beta [Klebsiella oxytoca]
 446.0 [0..8] [684..71]
IF2_DESRM - Translation initiation factor IF-2 OS=Desulfotomaculum reducens (strain MI-1) GN=infB PE=3 SV=1
 444.0 [0..14] [685..329]
IF2_DESHY - Translation initiation factor IF-2 OS=Desulfitobacterium hafniense (strain Y51) GN=infB PE=3 SV=1
gi|219539954, gi... - gi|219669694|ref|YP_002460129.1| translation initiation factor IF-2 [Desulfitobacterium hafniense DC...
 442.0 [0..38] [684..344]
gi|109643557, gi... - gi|109645608|ref|ZP_01369528.1| translation initiation factor IF-2 [Desulfitobacterium hafniense DCB...
 441.0 [0..38] [684..228]
gi|3850646 - gi|3850646|emb|CAA05704.1| initiation factor IF2-beta [Enterobacter cloacae]
 441.0 [0..8] [684..71]
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis GN=infB PE=3 SV=1
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis (strain SC-B67) GN=infB PE=3 SV=1
IF2_SALCH - Translation initiation factor IF-2 OS=Salmonella choleraesuis GN=infB PE=3 SV=1
 439.0 [0..8] [684..227]

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Predicted Domain #1
Region A:
Residues: [1-166] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFLSACTSW RHVHNAGFTF ITKFPFVRNV HKLSYHISPL SSRFSLADIS VKENNHPNGP  60
   61 QLRLQTHFFH SSSPMHATKG FRFPKSSTPL TLPAVLSVAS FANLLQIPTR RILRDLNRLG 120
  121 IKDVFPEYLI TYEYSSLLAE EYGFDVQEAA AYSAPSPKSL NSKKDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.39794
Match: 2e87A
Description: No description for 2e87A was found.

Predicted Domain #2
Region A:
Residues: [167-686] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLRPPVVTL MGHVDHGKTT LLDAFRKSTI ASTEHGGITQ KIGAFTVPFD KGSKFITFLD  60
   61 TPGHMAFEAM RKRGANIADI VVLVVAGDDG VKPQTVEAIK HIQSADVPVV VALTKSDRPG 120
  121 TPIHKIYEQL LNNGIQVEAL GGETQIIPIS AKTGKGIPEL EAAILTLAEI MEIRASPRDP 180
  181 FQGWIVESSV TKGVGSSATV VVKRGTVKKG MYLVAGKSWC KVRSLVDVNK KSIKQVLPGQ 240
  241 AAQVYGWKDL PIAGDLAYEV KSESEAKRIL SDIYRQSNEQ NFYELAESQN EQRVSALAAK 300
  301 KSGPAAIQEE TSVSKSFNII AKCEDTGSME ALSDYLKPLQ FGKVKSRVLY TGVGPVTETD 360
  361 IERAETSDAI IISFGVSVPK ATFRLAEKHN VKLLFHNVIY HLMDDVRKLF ALRLPPILVQ 420
  421 RVTGEAIISA IFDIKAKRAV VHVAGCRVTN GTIEKSHKIR LVRNDKIIWS GEIDSLKHLK 480
  481 EEVTSIKKGR ECGILLKNFD EIVTGDKLQT FVEEYKPPDF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1zo1I
Description: IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle