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View Structure Prediction Details

Protein: git7
Organism: Schizosaccharomyces pombe
Length: 379 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for git7.

Description E-value Query
Range
Subject
Range
gi|17017306 - gi|17017306|gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare]
267.0 [0..12] [379..6]
gi|62467587 - gi|62467587|gb|AAX83943.1| Sgt1b [Capsicum annuum]
266.0 [0..12] [379..2]
gi|51511450 - gi|51511450|gb|AAU04979.1| SGT1 [Solanum tuberosum]
262.0 [0..12] [379..2]
gi|73989332 - gi|73989332|ref|XP_851986.1| PREDICTED: similar to suppressor of G2 allele of SKP1 [Canis familiaris...
254.0 [0..22] [379..177]
gi|40974915 - gi|40974915|emb|CAF06580.1| SGT1-like protein [Brassica oleracea]
253.0 [0..12] [379..2]
SGT1B_ARATH - Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1
252.0 [0..12] [379..2]
gi|29468339 - gi|29468339|gb|AAO85509.1| SGT1 [Nicotiana benthamiana]
248.0 [0..12] [379..2]
gi|6581058 - gi|6581058|gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]
247.0 [0..12] [379..6]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDLSDIND SLFKLSDKLS NDLAKQRNLC IVKEPSFSIE EHIKCFTTCI NTYKPFSCLK  60
   61 HANWALLLAK KKSDTGLIGY CQSLRGLAYY LLEQYQSSAI CFGFALKHLK KEDLTKWQVQ 120
  121 LDSMLTIVHE QQNQDTSSLI PDECPNIPEL EAAKIEGDEE FLNMSLKAPE GQIEKNEEKL 180
  181 SNRIRYDWSQ TSFSLNIDIY AKKVKDEDVS LLMEKNTLKI EIKLEDGSIF SLVLDPLYEE 240
  241 IVPEKSSFKL FSSKVEITLI KKVSEIKWEA LVKSPANNSV NVYAKDSNHS SASGNTKNKA 300
  301 KDWDSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #2
Region A:
Residues: [307-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKLADLEEDE PTGEAALANL FQNLYKNADD DTRRAMMKSY TESNGTALST NWKDVKSKTF  60
   61 ETKPPQGMEP KKF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.107905
Match: PF05002.6
Description: No description for PF05002.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle