YRC Public Data Repository - Protein Structure Prediction

Protein:	cuf2
Organism:	Schizosaccharomyces pombe
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cuf2.

Description	E-value	Query Range	Subject Range
gi\|38111244, gi\|... - gi\|39971779\|ref\|XP_367280.1\| hypothetical protein MG07205.4 [Magnaporthe grisea 70-15], gb\|EAA56850....	120.0	[0..2]	[66..1]
gi\|42548302, gi\|... - gi\|46128031\|ref\|XP_388569.1\| hypothetical protein FG08393.1 [Gibberella zeae PH-1], gi\|42548302\|gb\|E...	119.0	[0..2]	[66..1]
gi\|45190311, gi\|... - gi\|45190311\|ref\|NP_984565.1\| AEL295Cp [Ashbya gossypii ATCC 10895], gi\|44983207\|gb\|AAS52389.1\| AEL29... gi\|44983207 - gi\|44983207\|gb\|AAS52389.1\| AEL295Cp [Ashbya gossypii ATCC 10895]	118.0	[0..1]	[63..1]
gi\|85097135 - gi\|85097135\|ref\|XP_960389.1\| hypothetical protein NCU04830 [Neurospora crassa OR74A] gi\|32407197, gi\|... - gi\|32407197\|ref\|XP_324187.1\| predicted protein [Neurospora crassa], gi\|28921879\|gb\|EAA31153.1\| predi...	116.0	[0..2]	[66..1]
gi\|50302397, gi\|... - gi\|50302397\|ref\|XP_451133.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640264\|emb\|CAH0272... gi\|49640264 - gi\|49640264\|emb\|CAH02721.1\| KLLA0A03047p [Kluyveromyces lactis]	115.0	[0..1]	[63..1]
gi\|190407952 - gi\|190407952\|gb\|EDV11217.1\| transcriptional activator HAA1 [Saccharomyces cerevisiae RM11-1a] HAA1_YEAST - Transcriptional activator HAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HAA1 PE=1... HAA1 - Transcriptional activator involved in the transcription of TPO2, YRO2, and other genes putatively en...	114.0	[0..1]	[63..1]
CRF1_YARLI - Copper resistance protein CRF1 OS=Yarrowia lipolytica GN=CRF1 PE=4 SV=1 CRF1_YARLI - Copper resistance protein CRF1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CRF1 PE=3 SV=1	111.0	[0..1]	[60..1]
AMT1_CANGA - Metal-activated transcriptional activator protein AMT1 OS=Candida glabrata GN=AMT1 PE=1 SV=1 AMT1_CANGA - Metal-activated transcriptional activator protein AMT1 OS=Candida glabrata (strain ATCC 2001 / CBS 1...	110.0	[0..1]	[62..1]
gi\|49654374, gi\|... - gi\|50420347\|ref\|XP_458707.1\| hypothetical protein DEHA0D06292g [Debaryomyces hansenii CBS767], gi\|49...	110.0	[0..1]	[60..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIIDGKNYA CVVCLRGHRG SSCQHQERAL IEVRTRGRPL LCKKCRAIKQ QLKSNLKCVC  60
   61 HLQPFLPFAN EYQELLNFTQ KNPILASLFL FSTDKDIMNS SLNPASQAYT FDLGRTLPIS 120
  121 EDILGYRKPL SLTDASNRID ASQLNEKEND SFTINQEADI FNFAKYLHSK DDISGIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits