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View Structure Prediction Details

Protein: crn1
Organism: Schizosaccharomyces pombe
Length: 601 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn1.

Description E-value Query
Range
Subject
Range
gi|23128236, gi|... - gi|23128236|ref|ZP_00110089.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668246...
375.0 [0..5] [440..657]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
373.0 [0..5] [437..1005]
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
371.0 [0..3] [433..854]
gi|37523925, gi|... - gi|37523925|ref|NP_927302.1| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi|35214...
362.0 [0..5] [477..710]

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Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRFVRASK YRHIFGQTCK KELCYDNIKL SNNAWDSNLL SVNPFYLSVN WNAGAGGALA  60
   61 VIPLNERGKL PDQVNLFRGH TAAVLDTDWN PFHDQVLASG GDDSKIMIWK VPEDYTVMEP 120
  121 YEDVHPIAEL KGHSRKVGLV QYHPTAANVL ASSSADNTIK LWDCEKGVAH VSLKMDVMCQ 180
  181 SMSFNADGTR LVTTSRDKKV RVWDPRTDKP VSVGNGHAGA KNPRVVWLGS LDRFATTGFS 240
  241 KMSDRQIALW DPTNLSEPIG GFTTLDTGSG ILMPFWDDGT KVIYLAGKGD GNIRYYEYEN 300
  301 DVFHYLSEFK SVDPQRGIAF LPKRGVNVSE NEVMRAYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 2aq5A
Description: Crystal Structure of Murine Coronin-1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [339-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVNDSIIEPI SFIVPRRSES FQSDIYPPAP SGKPSLTAEE WASGKDAQPD LLDMSTLYES  60
   61 KGTVEKAVSA TVPSAGAQVQ KHNEEKVETP KPEAQPVSKP KESA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1z68A
Description: Crystal Structure Of Human Fibroblast Activation Protein alpha
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [443-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEQKPSKEPE VKPTTPSASK VEEPSKKRDE DNHQKEETVT QPKREKTPVE KSFPKPASSP  60
   61 VTFSEDVKKE PSEEKKLEVS DEAPKAAPLA ESKKVEEKEP FYVSKDKKDI SAVNLADLNK 120
  121 RFEGFEKRYE EELAIRDWKI AQLEDKLAKL TEAIKEKCN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.66
Match: 2j63A
Description: No description for 2j63A was found.

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