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View Structure Prediction Details

Protein: cfr1
Organism: Schizosaccharomyces pombe
Length: 620 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cfr1.

Description E-value Query
Range
Subject
Range
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...
213.0 [0..34] [620..759]
ZAN_MOUSE - Zonadhesin OS=Mus musculus GN=Zan PE=1 SV=1
210.0 [0..72] [618..544]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...
209.0 [0..46] [620..1364]
gi|88188037, gi|... - gi|88602575|ref|YP_502753.1| mucin 2, intestinal/tracheal [Methanospirillum hungatei JF-1], gi|88188...
196.0 [0..49] [619..1547]
gi|39579415, gi|... - gi|39579415|emb|CAE56721.1| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi|187040086|em...
185.0 [0..78] [615..4]
gi|33310026 - gi|33310026|gb|AAQ03243.1|AF414112_1 putative cell wall protein FLO11p [Candida albicans]
gi|68482880, gi|... - gi|68482880|ref|XP_714666.1| putative cell wall adhesin [Candida albicans SC5314], gi|46436253|gb|EA...
182.0 [0..57] [616..145]
gi|70873262 - gi|70873262|gb|EAN87106.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71413651 - gi|71413651|ref|XP_808957.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
177.0 [0..28] [620..689]
gi|37930527, gi|... - gi|37930527|gb|AAP74661.1| elicitor-like transglutaminase M81 [Phytophthora infestans], gi|23505399|...
174.0 [0..32] [618..638]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTNQFMVS VAKIDAGMAI LLTPSFHIIE FPSVLLPNDA TAGSIIDISV HHNKEEEIAR  60
   61 ETAFDDVQKE IFETYGQKLP SPPVLKLKNA TQTSIVLEWD PLQLSTARLK SLCLYRNNVR 120
  121 VLNISNPMTT HNAKLSGLSL DTEYDFSLVL DTTAGTFPSK HITIKTLRMI DL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 1wfoA
Description: The eighth FN3 domain of human sidekick-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein binding 2.42181781846337 bayes_pls_golite062009
binding 1.91252838098228 bayes_pls_golite062009
receptor activity 0.36292763239647 bayes_pls_golite062009
transmembrane receptor activity 0.239312512917867 bayes_pls_golite062009
cytokine binding 0.23854252705133 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [173-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGIQVCVGNM VPNEMEALQK CIERIHARPI QTSVRIDTTH FICSSTGGPE YEKAKAANIP  60
   61 ILGLDYLLKC ESEGRLVNVS GFYIENRASY NANASINSVE AAQNAAPNLN ATTEQPKNTA 120
  121 EVAQGA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.41
Match: 2d8mA
Description: No description for 2d8mA was found.

Predicted Domain #3
Region A:
Residues: [299-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASAKAPQQTT QQGTQNSANA EPSSSASVPA EAPETEAEQS IDVSSDIGLR SDSSKPNEAP  60
   61 TSSENIKADQ PENSTKQENP EEDMQIKDAE EHSNLESTPA AQQTSEVEAN NHQEKPSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [417-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPAVEQINVN EENNTPETEG LEDEKEENNT AAESLINQEE TTSGEAVTKS TVESSANEEE  60
   61 AEPNEIIEEN AVKSLLNQEG PATNEEVEKN NANSENANGL TDEKIIEAPL DTKENSDDDK 120
  121 PSPAAAEDIG TNGAIEEIPQ VSEVLEPEKA HTTNLQLNAL DKEEDLNITT VKQSSEPTAD 180
  181 DNLIPNKEAE IIQSSDEFES VNID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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