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View Structure Prediction Details

Protein: cdc13
Organism: Schizosaccharomyces pombe
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc13.

Description E-value Query
Range		 Subject
Range
CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL...
CG21_EMENI - G2/mitotic-specific cyclin-B OS=Emericella nidulans GN=nimE PE=2 SV=1
 335.0 [0..16] [472..1]
gi|46108818, gi|... - gi|46108818|ref|XP_381467.1| hypothetical protein FG01291.1 [Gibberella zeae PH-1], gi|42547757|gb|E...
 333.0 [0..1] [463..1]
CCNB1_SOYBN - G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
 333.0 [0..27] [449..1]
gi|114599953 - gi|114599953|ref|XP_517728.2| PREDICTED: cyclin B1 [Pan troglodytes]
 330.0 [0..20] [447..101]
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1
 329.0 [0..23] [451..1]
gi|51762951 - gi|51762951|ref|XP_485921.1| PREDICTED: similar to cyclin B1 isoform 1 [Mus musculus]
 327.0 [0..23] [447..1]
gi|1835260 - gi|1835260|emb|CAA99990.1| mitotic cyclin [Sesbania rostrata]
 324.0 [0..27] [449..1]

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Predicted Domain #1
Region A:
Residues: [1-195] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRRLTRQH LLANTLGNND ENHPSNHIAR AKSSLHSSEN SLVNGKKATV SSTNVPKKRH  60
   61 ALDDVSNFHN KEGVPLASKN TNVRHTTASV STRRALEEKS IIPATDDEPA SKKRRQPSVF 120
  121 NSSVPSLPQH LSTKSHSVST HGVDAFHKDQ ATIPKKLKKD VDERVVSKDI PKLHRDSVES 180
  181 PESQDWDDLD AEDWA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [196-482] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLMVSEYVV DIFEYLNELE IETMPSPTYM DRQKELAWKM RGILTDWLIE VHSRFRLLPE  60
   61 TLFLAVNIID RFLSLRVCSL NKLQLVGIAA LFIASKYEEV MCPSVQNFVY MADGGYDEEE 120
  121 ILQAERYILR VLEFNLAYPN PMNFLRRISK ADFYDIQTRT VAKYLVEIGL LDHKLLPYPP 180
  181 SQQCAAAMYL AREMLGRGPW NRNLVHYSGY EEYQLISVVK KMINYLQKPV QHEAFFKKYA 240
  241 SKKFMKASLF VRDWIKKNSI PLGDDADEDY TFHKQKRIQH DMKDEEW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.221849
Match: 2jgzB
Description: No description for 2jgzB was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle