YRC Public Data Repository - Protein Structure Prediction

Protein:	byr4
Organism:	Schizosaccharomyces pombe
Length:	665 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for byr4.

Description	E-value	Query Range	Subject Range
gi\|40747688, gi\|... - gi\|75858910\|ref\|XP_868795.1\| hypothetical protein AN9413.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	236.0	[0..41]	[661..306]
gi\|55380423, gi\|... - gi\|56307416\|ref\|NP_787974.3\| dumpy CG33196-PB [Drosophila melanogaster], gi\|55380423\|gb\|AAN10358.4\| ...	225.0	[0..2]	[538..5601]
gi\|68474083, gi\|... - gi\|68474083\|ref\|XP_718938.1\| possible spindle checkpoint protein [Candida albicans SC5314], gi\|46440... orf19.13499 - orf19.6080 CGDID:CAL0005208 Assembly 19, Contig19-20237 (153860, 155146) CDS, translated using codon...	222.0	[0..292]	[664..52]
gi\|145015857, gi... - gi\|39942164\|ref\|XP_360619.1\| hypothetical protein MGG_03162 [Magnaporthe grisea 70-15], gb\|EAA51567....	221.0	[0..41]	[661..313]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	199.0	[0..3]	[519..1090]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	193.0	[0..3]	[538..1466]
gi\|46123729, gi\|... - gi\|46123729\|ref\|XP_386418.1\| hypothetical protein FG06242.1 [Gibberella zeae PH-1], gi\|42550890\|gb\|E...	188.0	[0..76]	[663..246]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	188.0	[0..3]	[538..817]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVECWDDD PDFASDVDNA SLFTQSIATT SASTSVDDGF SFDDSISRLN SLSISDVPSA  60
   61 HSRVEQWNQQ VHNLNHELSS NKNRISSNVE GYEDDFSFDE EGEEGNNEFN TLRPNKYQDA 120
  121 DVDEFNTIRA SETASQRPPI PFSSDTLKKT YLSSENDARY PSVSDSPYCE SEGFSSFEDD 180
  181 FEIDPDTDLN SILHRKQNRM DPKASFSSVE QSSLRTPSSA HNDDGFWDDF DIDFNNETES 240
  241 IFRKKIRSPN TINQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [256-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPYISSTISY QPNVHQDAKY YPLCKDIFPS LANENPHSDN PNLKYSSKTL SKRDTSSHYP  60
   61 ETLKASSKHS SPVKGNSSIS STWTPSNLKI YHSKNSMGLM DLDALKTVAS NSKYRTKPKN 120
  121 CKTYGDGTEL DTLDELPVDY EFELKLRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [404-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQTTKVSGTP KSKHAGSTQE WHSHTTPRST SKHENNLNNI TNSAKNEHIR SQRQHKTHAA  60
   61 PSKELTKESL SNDQLSVKEK RRHHKKAPTL IQNLNSPRTP KIV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [507-665]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKMRYNPTKH CWEGNDYAIR DFDTPISPSR PALISNISTK KGIQVVGNMV YDPTRLRWID  60
   61 NSISGQEAED PFSGFDDLED TDSTSQYLNE NSGSFNGSIN SIINFPDMSE IYDVGPEFEK 120
  121 KQFSEDIQWR KRIDGWFFSF KNDDRSRLWE LYNILNAEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits