YRC Public Data Repository - Protein Structure Prediction

Protein:	bem46
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for bem46.

Description	E-value	Query Range	Subject Range
gi\|987287 - gi\|987287\|gb\|AAB53686.1\| temperature sensitive supressor of Saccharomyces cerevisiae bem1/bud5	213.0	[0..1]	[299..40]
gi\|62662993, gi\|... - gi\|62662993\|ref\|XP_225044.3\| PREDICTED: similar to Bem46 CG18642-PA [Rattus norvegicus], gi\|15782364...	185.0	[0..2]	[297..27]
ABHDD_MOUSE - Protein ABHD13 OS=Mus musculus GN=Abhd13 PE=2 SV=1	184.0	[0..2]	[297..27]
gi\|28925974, gi\|... - gi\|32420537\|ref\|XP_330712.1\| hypothetical protein [Neurospora crassa], gi\|28925974\|gb\|EAA34966.1\| hy... gi\|85111990 - gi\|85111990\|ref\|XP_964202.1\| hypothetical protein [Neurospora crassa OR74A]	179.0	[0..4]	[297..22]
ABHDD_XENLA - Protein ABHD13 OS=Xenopus laevis GN=abhd13 PE=2 SV=1	176.0	[0..5]	[291..30]
gi\|83765123 - gi\|83765123\|dbj\|BAE55266.1\| unnamed protein product [Aspergillus oryzae] gi\|169765594 - gi\|169765594\|ref\|XP_001817268.1\| hypothetical protein [Aspergillus oryzae RIB40]	175.0	[0..1]	[291..16]
ABHDD_DANRE - Protein ABHD13 OS=Danio rerio GN=abhd13 PE=2 SV=1	175.0	[0..4]	[297..29]
gi\|76668134, gi\|... - gi\|76668134\|ref\|XP_878914.1\| PREDICTED: similar to abhydrolase domain containing 13 isoform 2 [Bos t...	174.0	[0..2]	[297..27]
ABHDD_CHICK - Protein ABHD13 OS=Gallus gallus GN=ABHD13 PE=2 SV=1	174.0	[0..2]	[297..27]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSLSSAIF NVLKYSGMAS LAVTLIALGF LYKYQKTLVY PSAFPQGSRE NVPTPKEFNM  60
   61 EYERIELRTR DKVTLDSYLM LQSESPESRP TLLYFHANAG NMGHRLPIAR VFYSALNMNV 120
  121 FIISYRGYGK STGSPSEAGL KIDSQTALEY LMEHPICSKT KIVVYGQSIG GAVAIALTAK 180
  181 NQDRISALIL ENTFTSIKDM IPTVFPYGGS IISRFCTEIW SSQDEIRKIK KLPVLFLSGE 240
  241 KDEIVPPPQM VLLFGLCGSA KKKFHSFPKC THNDTCLGDG YFQVIADFLA ENDINTPAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1orvA
Description:	Dipeptidyl peptidase IV/CD26, N-terminal domain; Dipeptidyl peptidase IV/CD26, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	0.685577841077355	bayes_pls_golite062009
catalytic activity	0.629869101256762	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: