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View Structure Prediction Details

Protein: alp16
Organism: Schizosaccharomyces pombe
Length: 759 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for alp16.

Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGIMKNDLL WFGNHVFDLT PNSFDSDFVE QLSKFEGKEG LKRKLFDSSE YFQNFSFQVN  60
   61 DDLLGKDVIL DISNQQLTPA VPGCETSSNS KLISASKEIT SERKRAKSSV SPSYLTDSSP 120
  121 SDLSVENKVL LTCPSWDGEN FKNLEARSPF ISEAPSRVYD YFLHNQDWSP KPLFSALQVY 180
  181 PLATIFNCVA GLPQGFESTV FPWNKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [207-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTFELDPTI SVSGMSDECF ASIVQKFSAI GGLIKKALNE FSLYKTNISF YLSNFIVNGV  60
   61 LQYRKEFQRW LRLYEFRRFG LIGLSNFVNS FSSFFELISH FLIKSAQNLK GDSLLDFLFD 120
  121 YARSCQNTIS YPIALQCLIY CSNPYFKRLE LALKVSCAYG HIDSSLFLSL PRFFPSELCV 180
  181 SIEQCIQFLS LIREQKEIFN KNNKEFINPL NIRFAYSFND INQACVIEER CN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [439-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSSLSFGNLE QTSVNNDSEE FETLLAKMNM TPDFNDNLLQ LKFTDDVRNV CPLNLNVCCC  60
   61 IAEPIQSFIL SFLRSTYKVL KNDFQVFDLL NFFHSTFLFQ NYEFSDNVIS LLKSRRLDKS 120
  121 DRNELAEDLN SDDRYNFISR LKKFIFMEKE KNGLSRSLSK SITFTLDSAS VSEFEDVYPD 180
  181 LQFQCQVIGA LRILFTDNSL NYYSKTFSYV LHLFQAQSDF 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [659-759]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSVELKDRS IVTKTTIMSW SKYQGTKESL FQFLSIYIPE CMLPFTKLLK SIYSPDCPTN  60
   61 IQNSAIKNAA SVHEQCTKAI YQKVKELFDT MKLWESSIKV S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.904 a.7.12 Description not found.


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Created and Maintained by: Michael Riffle