YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309348, CG1...
Organism:	Drosophila melanogaster
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309348, CG1....

Description	E-value	Query Range	Subject Range
gi\|86355902, gi\|... - gi\|86355902\|ref\|YP_467794.1\| hypothetical protein RHE_CH00244 [Rhizobium etli CFN 42], gi\|86280004\|g...	140.0	[0..3]	[86..6]
gi\|113871296, gi... - gi\|150398651\|ref\|YP_001329118.1\| putative selenoprotein [Sinorhizobium medicae WSM419], gi\|150030166...	140.0	[0..3]	[87..6]
gi\|15073194 - gi\|15073194\|emb\|CAC41702.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964018 - gi\|15964018\|ref\|NP_384371.1\| hypothetical protein SMc00345 [Sinorhizobium meliloti 1021]	140.0	[0..3]	[87..6]
gi\|33573086 - gi\|33573086\|emb\|CAE36728.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596083 - gi\|33596083\|ref\|NP_883726.1\| hypothetical protein BPP1426 [Bordetella parapertussis 12822] gi\|33575915, gi\|... - gi\|33601479\|ref\|NP_889039.1\| hypothetical protein BB2500 [Bordetella bronchiseptica RB50], gi\|335759... gi\|33593121, gi\|... - gi\|33593121\|ref\|NP_880765.1\| hypothetical protein BP2106 [Bordetella pertussis Tohama I], gi\|3356349...	139.0	[0..3]	[90..10]
gi\|13473369, gi\|... - gi\|14024118\|dbj\|BAB50722.1\| mll3944 [Mesorhizobium loti MAFF303099], gi\|13473369\|ref\|NP_104936.1\| hy...	137.0	[0..4]	[86..16]
gi\|17934144, gi\|... - gi\|17934144\|ref\|NP_530934.1\| hypothetical protein Atu0228 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25378705, gi\|... - pir\|\|AD2604 conserved hypothetical protein Atu0228 [imported] - Agrobacterium tumefaciens (strain C5...	137.0	[0..3]	[86..7]
gi\|116250018, gi... - gi\|116250018\|ref\|YP_765856.1\| hypothetical protein RL0250 [Rhizobium leguminosarum bv. viciae 3841],...	135.0	[0..3]	[87..29]
gi\|94413596, gi\|... - gi\|94413596\|ref\|ZP_01293475.1\| hypothetical protein PaerP_01004612 [Pseudomonas aeruginosa PA7], gi\|...	135.0	[0..4]	[86..8]
gi\|213968667, gi... - gi\|213968667\|ref\|ZP_03396809.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],... gi\|28869004, gi\|... - gi\|28869004\|ref\|NP_791623.1\| hypothetical protein PSPTO_1798 [Pseudomonas syringae pv. tomato str. D... tr\|Q885N3\|Q885N3... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1798 PE=4 SV=1	134.0	[0..4]	[87..8]
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	134.0	[0..4]	[88..8]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVEVEYCG ICNFSGQCHL LREFLLASSP DLDISCRTGR RGSFEVSIDG QLVHSKLSCL  60
   61 AFPQHASVLA QVQKAERGEP VEKVLEQPIK DCVVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2ojlA
Description:	No description for 2ojlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits