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View Structure Prediction Details

Protein: sw-PJ
Organism: Drosophila melanogaster
Length: 663 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sw-PJ.

Description E-value Query
Range
Subject
Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
529.0 [0..42] [661..893]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKAELERK KAKLAALREE KDRRRREKEI KDMEEAAGRI GGGAGIDKDQ RKDLDEMLSS  60
   61 LGVAPVSEVL SSLSSVNSMT SDNSNTQTPD ASLQATVNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-663]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSGGKKQPLN LSVYNVQATN IPPKETLVYT KQTQTTSTGG GNGDVLSCHS SPLSGYMEDW  60
   61 WRPRKAHATD YYDEYNLNPG LEWEDEFTDD EESSLQNLGN GFTSKLPPGY LTHGLPTVKD 120
  121 VAPAITPLEI KKETEVKKEV NELSEEQKQM IILSENFQRF VVRAGRVIER ALSENVDIYT 180
  181 DYIGGGDSEE ANDERSHARL SLNRVFYDER WSKNRCITSM DWSTHFPELV VGSYHNNEES 240
  241 PNEPDGVVMV WNTKFKKSTP EDVFHCQSAV MSTCFAKFNP NLILGGTYSG QIVLWDNRVQ 300
  301 KRTPIQRTPL SAAAHTHPVY CLQMVGTQNA HNVISISSDG KLCSWSLDML SQPQDTLELQ 360
  361 QRQSKAIAIT SMAFPANEIN SLVMGSEDGY VYSASRHGLR SGVNEVYERH LGPITGISTH 420
  421 YNQLSPDFGH LFLTSSIDWT IKLWSLKDTK PLYSFEDNSD YVMDVAWSPV HPALFAAVDG 480
  481 SGRLDLWNLN QDTEVPTASI VVAGAPALNR VSWTPSGLHV CIGDEAGKLY VYDVAENLAQ 540
  541 PSRDEWSRFN THLSEIKMNQ SDEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.39794
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle