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View Structure Prediction Details

Protein: Axs-PA
Organism: Drosophila melanogaster
Length: 646 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Axs-PA.

Description E-value Query
Range
Subject
Range
gi|110758395 - gi|110758395|ref|XP_392436.3| PREDICTED: similar to CG15270-PA, isoform A [Apis mellifera]
548.0 [0..11] [636..47]

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Predicted Domain #1
Region A:
Residues: [1-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDAKSPGP RTRNIIENQL FRRQRSLKLE ALQRQRTLDS NDGVEGLGAD TEPFDKTHIV  60
   61 IIFTEKAKLR HCQDVEKIIQ EFGIQTTLEI VGKTEKYLYL SASVDTLLRL ADAAELEKMT 120
  121 TTHSMQKFNH GCISDFLLPG MGKEQILRYC EIPVLIKDVI QDGIKSYVQK GYIEDMFPLH 180
  181 DILYLE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [187-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFNWNLKRTK LPIEDIRNYF GSSIGLYFGF IEFYTKALIF PSLFGILQYV FDLNISLVCS  60
   61 FYVVWTTIFL ELWKRKCAGY SYRWGTIEMS SLDKPRSAYT GQLKPDPITG KMTLHYPMRY 120
  121 TYLQMYCISY PVVLGCVVAA GWFALYQFQI EAEVLADFGP DSWLLYVPVI VQSVLIAIFS 180
  181 WAYEKLATFL TNLENHRTRS QYDRHRVNKL MLFEIVNNFF SQFYIAFVLH DLRQLKYQLM 240
  241 MQLLVFQLLC IAQEIGIPLL AVLRQKYAEF RHREVAEEKL RSISDLPRYE QSFYESGLDE 300
  301 YHSTYEDYLQ VCIQFGFVVL FAAVAPFAAI GALLNNVFAV HIDMWKLCNI FKRPFARRAK 360
  361 NIGAWQLAFE LLSVMSLLSN CGLLFLQPNV KDFFSHWLPS VPDLSFVIFE HLLLGLKFLI 420
  421 HKVIHERPRW VRIGLLKADF ETSQALKQLK KFKAEANKMA 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle