YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0309275, CG4...
Organism:	Drosophila melanogaster
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309275, CG4....

Description	E-value	Query Range	Subject Range
gi\|54643379\|gb\|E... - GA18054-PA [Drosophila pseudoobscura], GA18054 [Drosophila pseudoobscura pseudoobscura] gi\|125982299, gi... - gi\|54643379\|gb\|EAL32123.1\| GA18054 [Drosophila pseudoobscura pseudoobscura], gi\|125982299\|ref\|XP_001... gi\|194107872, gi... - gi\|195167305\|ref\|XP_002024474.1\| GL15837 [Drosophila persimilis], gi\|194107872\|gb\|EDW29915.1\| GL1583...	444.0	[0..1]	[276..1]
gi\|31203521, gi\|... - gi\|31203523\|ref\|XP_310710.1\| ENSANGP00000024702 [Anopheles gambiae str. PEST], gi\|31203521\|ref\|XP_31... AGAP000393-PA, A... - Trimeric intracellular cation channel type B\|protein_coding\|X:7194615:7195860:1\|gene:AGAP000393, Tri...	439.0	[0..1]	[276..1]
gi\|108882124, gi... - gi\|94468672\|gb\|ABF18185.1\| uncharacterized transmembrane protein [Aedes aegypti], gi\|157167605\|ref\|X...	439.0	[0..1]	[276..1]
gi\|91086497 - gi\|91086497\|ref\|XP_971040.1\| PREDICTED: similar to transmembrane protein 38A [Tribolium castaneum]	424.0	[0..1]	[276..1]
CE35686 - status:Partially_confirmed UniProt:Q9NA73 protein_id:CAB55033.2	418.0	[0..1]	[259..10]
gi\|187023180, gi... - gi\|39591423\|emb\|CAE73477.1\| Hypothetical protein CBG20929 [Caenorhabditis briggsae], gi\|187023180\|em... gi\|157752930 - gi\|157752930\|ref\|XP_001680177.1\| Hypothetical protein CBG20929 [Caenorhabditis briggsae AF16]	414.0	[0..1]	[257..10]
gi\|66554647 - gi\|66554647\|ref\|XP_395200.2\| PREDICTED: similar to CG4239-PC, isoform C [Apis mellifera]	404.0	[0..1]	[263..1]
TM38B_RAT - Trimeric intracellular cation channel type B OS=Rattus norvegicus GN=Tmem38b PE=2 SV=1	375.0	[0..8]	[249..7]
TM38B_MOUSE - Trimeric intracellular cation channel type B OS=Mus musculus GN=Tmem38b PE=1 SV=1	373.0	[0..8]	[249..7]

Back

Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEAFLDVA NQVIKLKMFP FFDIAHSLLA ALAVREDLGA NAQAFSRKHP LACWLSTMLV  60
   61 IFAGGMVANG LLGEPILAPL KNTGQLLVGT AVWYVVFYTP FDIGYKVAKF LPVKIVASAM 120
  121 KEIYRAKKVY DGVGHAAKLY PNAWIIMIII GTLKGNGAGF TKLIERLIRG AWTPTAMEFM 180
  181 QPSFYTKASL LASIIFVLDK KTDWISAPHA LVYFGIVIFL VYFKLSSILL GIHDPFLPLE 240
  241 NLCCAIFFGG IWDSLAKILG RGQAKDGDSK DVKKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	150.60206
Match:	PF05197.4
Description:	No description for PF05197.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits