YRC Public Data Repository - Protein Structure Prediction

Protein:	CG9065-PA
Organism:	Drosophila melanogaster
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG9065-PA.

Description	E-value	Query Range	Subject Range
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	94.0	[0..26]	[88..25]
gi\|49095078, gi\|... - gi\|67537386\|ref\|XP_662467.1\| hypothetical protein AN4863.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	91.0	[0..10]	[88..19]
CX171_ARATH - Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana GN=COX17-1 PE=2 SV=1	91.0	[0..18]	[88..4]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	87.0	[0..27]	[88..27]
COX17 - COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) ENSCJAT00000017281 - null ENSPTRT00000028506 - null	87.0	[0..27]	[88..2]
COX17_PIG - Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1	84.0	[0..27]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSASQGVA APSVSAAHPL TTASAATAST TTASAATASG EKPKCKACCA CPETKRARDA  60
   61 CIVENGEENC LALIEAHKKC MRDAGFNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits