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View Structure Prediction Details

Protein: CG1998-PA, FBpp0...
Organism: Drosophila melanogaster
Length: 406 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1998-PA, FBpp0....

Description E-value Query
Range
Subject
Range
gi|54642681, gi|... - gi|54642681|gb|EAL31426.1| GA15176-PA [Drosophila pseudoobscura], gi|125980700|ref|XP_001354373.1| G...
302.0 [0..56] [406..18]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPVHGKPP NSMGLSSGSL SASSPISVSQ QAGSSGNSSS SSSSSSSYSL GGGIVKDKAG  60
   61 LPPVYLNLND NAKEQTPLPG SPLQNWDDAR TADVWLSSLH SVIFIITCAL AAFILFRNVL 120
  121 TWHLQSFWGA SGDFWQSQWD KFIDSFGDEP MVLWVFGTTI FTMLVYWTVG TLYTFMDLTN 180
  181 RPACLRKYKI QPGTNEPVEV RRLLKVIWCV VCNQIFVGIP LAYASYRLME IR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSDIRDLPT FHWVCFELTV CILMEELGFY YSHRLLHHKH IYKYIHKQHH EWTAPISVTA  60
   61 IYCHPIEHIF SNLLPPFLGV FLMGSHVATA WLWFALAILS TLNAHSGYHL PFFPSPEAHD 120
  121 FHHLKFNNCF GVLGVLDRLH GTDSLFRATK SYARHIMMLS FKPPRDAFPD PTMK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.657577
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle