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View Structure Prediction Details

Protein: l(1)G0232-PB
Organism: Drosophila melanogaster
Length: 802 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(1)G0232-PB.

Description E-value Query
Range
Subject
Range
l(1)G0232-PC - The gene lethal (1) G0232 is referred to in FlyBase by the symbol Dmel\l(1)G0232 (CG32697, FBgn00283...
541.0 [0..10] [802..5]

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Predicted Domain #1
Region A:
Residues: [1-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHLYQRRRN REQAVKQFID LCNNLGANCS TTTATSPSTS SSSASSTQNL IAVVPPQLQQ  60
   61 LQVQLPAPGG GGGAGAGGGG GGGGGAAPVR RHISHTTAVK FLYARKFDIP RAVSLYEQHE 120
  121 QIRLKEYLYN IDPDVEPLRS ELQTGKFTIL PARTSSGAAI ALFTANRHSP LSVSHTTTLQ 180
  181 GIVYQLDSAL QDSETQRAGL VFIYDMSGSK YSNFDYDLSQ KILTLLKGGY PARLKKVLIV 240
  241 TAPLWFKAPF KILRLFVREK LRERVFTVSV PQLALHVPRK ALPIHLGGTL EVDHATWLLS 300
  301 CRQSMTNRED ELLANIVGVG GGSGSGSAAG SAAIVSTNGT ETEAATTAAT IISAVHQLGD 360
  361 NNTTVVTVSN GVGPAGSASG GATTAASAAT EPNENITING LSPSHRQAAN NSSSSSSSAA 420
  421 TVANPLKLNT SGSAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 1o6uA
Description: The Crystal Structure of Human Supernatant Protein Factor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [436-802]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSTITNATT AAGAAGAAAG TTTNGGGEFW SENPPSSASS GFSDDDSLAG QEGDPKPIDQ  60
   61 IVQMVKQRGR HGLIKEYADI RNRAPEGTFL HARMRANLTK NRYTDVLCYD HSRVVLAHED 120
  121 GDEPSDYINA NFVDGYKQKN AYISTQGPLP KTSQDFWRMI WEQHCLVIVM TTRVMERGRV 180
  181 KCGQYWEPTE ESSLEFGDYH VRTISVECNE DYMVASLELR NIKTDEIRNV SHWQFTSWPD 240
  241 YGVPSSAMAM LNFLQKVREK QAQLVQGLGD TWAGHPRGPP IVVHCSAGIG RTGTFITLDI 300
  301 CISRLEDVGT ADIRGTVEKI RSQRAYSIQM PDQYVFCHLA LIEYAYSRGM LQTVDLAGFD 360
  361 EREPDSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.522879
Match: 2pa5A
Description: No description for 2pa5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle