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View Structure Prediction Details

Protein: b6-PA
Organism: Drosophila melanogaster
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for b6-PA.

Description E-value Query
Range
Subject
Range
gi|3242148 - gi|3242148|emb|CAA76791.1| pentaxin-like protein [Drosophila melanogaster]
443.0 [0..1] [558..1]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRLHLALV GVVLLNATAS FAWKPIVGGG SGISGGTAAY SLKQSHPGAA SSSHEISTSF  60
   61 SQFGGDKETT EVEDELLLGR AAIVNGVDSS AAVSHPISFA DHLEDQYESY SIEDEAPKEP 120
  121 LAFPRSPVYG SDRCSVKKFA FNQDGEVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1wcsA
Description: A mutant of Trypanosoma rangeli sialidase displaying trans-sialidase activity
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [149-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGNPMPELDQ FTICFWMRFT NHSGDHVLLT YEAGKEPREV QIWVANAQNS SFLSMAIKGQ  60
   61 QMYRLNYPLK MRQWHHMCSS WNGKTGEWQA WLKAERIGRG FHNSLVGHKI PANGKLRSGG 120
  121 SSVTGEVSHG LHFEMTLVQV YRVALSAGKA HRDHKHHHVH HFDHEGQEVS STTRAPPSIN 180
  181 RPQPMHTLLA SGQIPTRVRI NLANPPPTAS GAPAPGAAGA PTDSAQQAIT INTNFVNGQI 240
  241 NAGSRLVAQQ LLGLSPPSGL QPSGGGKRFQ MLSNSANVQF IDETETHIQF KRNTDATKKV 300
  301 QKRGLVLLDD GSVVDDGVGS GTDGSLIYNG LADFGGQQFK QDLTLKMSLE EEISTHDREP 360
  361 AEEEVRAVMA ICSSCHTEPF QGAIVFSWKD VREHMNNALK GLSVGPCGNF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.30103
Match: 1dykA
Description: Laminin alpha2 chain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle