YRC Public Data Repository - Protein Structure Prediction

Protein:	pck-PC, pck-PA
Organism:	Drosophila melanogaster
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pck-PC, pck-PA.

Description	E-value	Query Range	Subject Range
gi\|54643749, gi\|... - gi\|54643749\|gb\|EAL32492.1\| GA13238-PA [Drosophila pseudoobscura], gi\|125983338\|ref\|XP_001355434.1\| G...	347.0	[0..1]	[256..1]
gi\|55243942, gi\|... - gi\|58380183\|ref\|XP_310368.2\| ENSANGP00000018926 [Anopheles gambiae str. PEST], gi\|55243942\|gb\|EAA061... AGAP003808-PA - pickel\|protein_coding\|2R:43705627:43706766:-1\|gene:AGAP003808	329.0	[0..14]	[256..2]
sinu-PA - The gene sinuous is referred to in FlyBase by the symbol Dmel\sinu (CG10624, FBgn0010894). It is a p...	329.0	[0..2]	[234..9]
gi\|157109110, gi... - gi\|157109110\|ref\|XP_001650527.1\| hypothetical protein AaeL_AAEL005228 [Aedes aegypti], gi\|108879101\|...	303.0	[0..14]	[256..2]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRELNKQQSQ DTTDSGVEKG DYPRATNGVV FGAIVTFASF FVLMMSFCSP YWIESYEETR  60
   61 ASFKNMGLWQ YCFKDFVYPK YAFLKQFTGC HNIFSHEYYV IREYLLPGWL MAVQGFVTMS 120
  121 FIIVFLVLAL LSLTIIRLPL KAVLQYEWLL VRLSYMGTAI SSLFMFLAVC IFGGCAYRRD 180
  181 WMMYPKFNVL GWSYALAVVT FMLLGLAALI LQREARQAYD ARGEQKNLVM QMEMQEPGYQ 240
  241 PPRHHHSQSR SLQGYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits