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View Structure Prediction Details

Protein: SNF1A-PA, SNF1A-...
Organism: Drosophila melanogaster
Length: 582 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF1A-PA, SNF1A-....

Description E-value Query
Range
Subject
Range
gi|54650760 - gi|54650760|gb|AAV36959.1| LP06206p [Drosophila melanogaster]
507.0 [0..1] [582..1]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQMRAAAAE AVAAGSANGQ PLVKIGHYLL GATLGTGTFG KVKIGEHQIT RVKVAVKILN  60
   61 RQKIKSLDVV GKIRREIQNL KLFRHPHIIK LYQVISTPSD IFMIMEYVSG GELFDYIVKH 120
  121 GKLQEHQARR FFQQIISGVD YCHRHMIVHR DLKPENLLLD HNMHVKIADF GLSNMMLDGE 180
  181 FLRTSCGSPN YAAPEVISGK LYAGPEVDIW SCGVILYALL CGTLPFDDEH VPTLFRKIKS 240
  241 GIFPIPEYLN KQVVNLVCQM LQVDPLKRAN IEEIKKHEWF QKDLPAYLFP SS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.154902
Match: 2h6dA
Description: No description for 2h6dA was found.

Predicted Domain #2
Region A:
Residues: [293-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEQDSNVIDT YAVAEVCTKF GVKETEVHNS LLSGDPHDQL AIAYHLIIDN KRFADDAANQ  60
   61 INEINNFFVA GSPPPPPPPP VPQSSMDHQA PLATVTVGGG TSASSGTATP VPPVAGGTPS 120
  121 STIPIRPHPE RIAPMRDRQL AMSVQTSGGG AFPEKTARGG TPI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [456-582]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRAKWHLGIR SQSKPNDIML EVYRAMKALS YEWKIINPYH VRVRRQNVKT GKFSKMSLQL  60
   61 YQVDAKSYLL DFKSLTNDEV EQGDDVIMES LTPPPLSVSG VMPLQPTGHH TMEFFEMCAA 120
  121 LIIQLAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 2v8qA
Description: No description for 2v8qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle