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View Structure Prediction Details

Protein: CstF-50-PA
Organism: Drosophila melanogaster
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CstF-50-PA.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
470.0 [0..3] [423..1277]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEILDPSN LVKNREILYR LMISQLMYDG LEKFAMELSM LVKADQCAPS ERLLHVMIAG  60
   61 MQTLSDKDKT NSDDVLPGID LEFEPEASAL APEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSYETAYVTS HKQACRAGAF SCDGSLVATG SVDASIKILD VERMLAKSAP EDIEPGREQQ  60
   61 GHPVIRTLYD HTDEVSYLEF HPKEHILASA SRDGTVKLFD IAKPSVKKAH KVFTDCEPVL 120
  121 CLSFHPTGDY VAIGTEHNVL RVYDVATTQC FVSAIPSQQH KAGVTCVKYS PTGKLYATGS 180
  181 YDGDIKIWDG ISGRCINTIA EAHGGAAICS LEFTRNGKYL LSSGMDSLVY LWELCTSRPI 240
  241 QTYTGAGTTG KQEHQTEAVF NHTEDYVLFP DEATTSLCSW NSRNGCRLTL NSLGHNGPVR 300
  301 YITHSPNGPA FLTCSDDFRA RFWYRRANNQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.0
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle