YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15291641
Organism:	Drosophila melanogaster
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15291641.

Description	E-value	Query Range	Subject Range
gi\|24114565, gi\|... - gi\|24114565\|ref\|NP_709075.1\| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 301], gi\|24... FMT_SHIF8 - Methionyl-tRNA formyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=fmt PE=3 SV=1 gi\|30064609, gi\|... - gi\|30064609\|ref\|NP_838780.1\| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 2457T], gi\|... FMT_SHIFL - Methionyl-tRNA formyltransferase OS=Shigella flexneri GN=fmt PE=3 SV=1	243.0	[0..2]	[218..108]
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1 FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1 gi\|85676754, gi\|... - gi\|89110723\|ref\|AP_004503.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E... EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... gi\|124498111, gi... - gi\|124532221\|ref\|ZP_01702159.1\| methionyl-tRNA formyltransferase [Escherichia coli B], gi\|124498111\|... gi\|194439996, gi... - gi\|83584646\|ref\|ZP_00923313.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g... FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P... FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1 gi\|242378814, gi... - gi\|251786541\|ref\|YP_003000845.1\| hypothetical protein B21_03089 [Escherichia coli BL21], gi\|24237881... gi\|253979272, gi... - gi\|254289965\|ref\|YP_003055713.1\| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi\|2... gi\|254038448, gi... - gi\|254038448\|ref\|ZP_04872504.1\| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi\|226838... gi\|253975116, gi... - gi\|254163215\|ref\|YP_003046323.1\| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...	242.0	[0..2]	[218..108]
gi\|193066482, gi... - gi\|75255414\|ref\|ZP_00727226.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli E22], gi\|... gi\|194430290, gi... - gi\|75208438\|ref\|ZP_00708767.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli B171], gi... FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV... FMT_ECO55 - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=fmt PE=3 SV=1 sp\|B7UK11\|FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV...	242.0	[0..2]	[218..108]
FMT_SHISS - Methionyl-tRNA formyltransferase OS=Shigella sonnei (strain Ss046) GN=fmt PE=3 SV=1	242.0	[0..2]	[218..108]
FMT_SHIDS - Methionyl-tRNA formyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fmt PE=3 SV=1	242.0	[0..2]	[218..108]
gi\|190900661, gi... - gi\|75227394\|ref\|ZP_00714170.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli B7A], gi\|... FMT_ECO24 - Methionyl-tRNA formyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fmt PE=3 SV... FMT_ECO8A - Methionyl-tRNA formyltransferase OS=Escherichia coli O8 (strain IAI1) GN=fmt PE=3 SV=1	242.0	[0..2]	[218..108]
gi\|188487856, gi... - gi\|75511167\|ref\|ZP_00733879.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 53638], g...	242.0	[0..2]	[218..108]
FMT_ECOLI - (P23882) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	242.0	[0..2]	[218..107]
gi\|254795224, gi... - gi\|254795224\|ref\|YP_003080061.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferas... FMT_ECO57 - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 GN=fmt PE=3 SV=3 gi\|25320684, gi\|... - pir\|\|E85993 hypothetical protein fmt [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|168758515, gi... - gi\|189354684\|gb\|EDU73103.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|15803815, gi\|... - gi\|15803815\|ref\|NP_289849.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|217320751, gi... - gi\|217324530\|ref\|ZP_03440614.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. TW14... FMT_ECO5E - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fmt PE=3 SV=1 gi\|208818701, gi... - gi\|208818701\|ref\|ZP_03259021.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|208733665, gi... - gi\|208812388\|ref\|ZP_03253717.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|188998872, gi... - gi\|188998872\|gb\|EDU67858.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|168777855, gi... - gi\|187767010\|gb\|EDU30854.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189361852, gi... - gi\|189361852\|gb\|EDU80271.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|189365130, gi... - gi\|189365130\|gb\|EDU83546.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|208807557, gi... - gi\|208807557\|ref\|ZP_03249894.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC42... gi\|195939835 - gi\|195939835\|ref\|ZP_03085217.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|15833407, gi\|... - gi\|15833407\|ref\|NP_312180.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. Sakai],... gi\|168802717, gi... - gi\|189375352\|gb\|EDU93768.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC508], ... gi\|189374012, gi... - gi\|189374012\|gb\|EDU92428.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC869], ...	242.0	[0..2]	[218..108]
gi\|75214907, gi\|... - gi\|75214907\|ref\|ZP_00713386.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli E110019],...	242.0	[0..2]	[218..108]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINVHASLLP KWRGAAPIIY AIMKGDASTG VSIMKIEPHR FDIGDILAQR EVAINPDVFM  60
   61 PDLHASLASL GAELLVDTIN NLSVRLKEAK PQDSSRVSYA PKITSKITEI IWSELSAIEI 120
  121 YTRHRALYGY KNLTTNFLGK QVQLLELRLP EKRVPVQEPG AISYLRKSRS LIIGCAQQSQ 180
  181 LEVLQLRVEG RKPMSAQDFN NGFLKQARSL SFTENKIASI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	1fmtA
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.210430303475354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: