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View Structure Prediction Details

Protein: stops-PC, stops-PB
Organism: Drosophila melanogaster
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stops-PC, stops-PB.

Description E-value Query
Range
Subject
Range
stops-PA - The gene slow termination of phototransduction is referred to in FlyBase by the symbol Dmel\stops (C...
737.0 [0..1] [445..77]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIFECFFD DTFEQISRNG LQDRQSRRDV LDHLSSIIKG CSGGQNSQTD EVAAIAVTAA  60
   61 MRYHRMAKEQ NGQVCLMGKY HNILYIGLRT CWDWGVRDSE VVVKLLVAIY ECEKTYERIF 120
  121 LGALFGPHAP HFIAGWRSDF QDQHENVRAM VYFLKHATRE QLTLPVWIPR FEQERQLRFI 180
  181 DVPIESCGKS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [191-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLRIALQAN APELLLILLR YGAAPQPPDG GASVIIALLD KLIEDGRNYS FELVMCLKIL  60
   61 LRNVVMIEMP FKPLLYAARR EMFFDRYGRL LMDKIIGKEQ VYGVPSLRHL CRCCIRDVMR 120
  121 MHNQLPSGID TLRLPKRLQR YIDLTEEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [339-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGPEAQDTED KDQQRGKSSA KCKMGSEMGR LDTISSAGES EDESENQAQL LQAVTDPEKA  60
   61 ALAAFMATGD GAYTEEAKKA AVEAYVAACP PDFDPDFPPI SLPGEPR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle