YRC Public Data Repository - Protein Structure Prediction

Protein:	CecB-PA
Organism:	Drosophila melanogaster
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CecB-PA.

Description	E-value	Query Range	Subject Range
CECA1_DROSI - Cecropin-A1 OS=Drosophila simulans GN=CecA1 PE=3 SV=1	101.0	[0..1]	[63..1]
gi\|2582213 - gi\|2582213\|gb\|AAB82465.1\| cecropin A1 [Drosophila melanogaster]	101.0	[0..1]	[63..1]
CEC2_DROVI - Cecropin-2 OS=Drosophila virilis GN=Cec2A PE=3 SV=1	100.0	[0..1]	[63..1]
CECC_DROYA - Cecropin-C OS=Drosophila yakuba GN=CecC PE=2 SV=1 CECC_DROER - Cecropin-C OS=Drosophila erecta GN=CecC PE=2 SV=1 CECC_DROTK - Cecropin-C OS=Drosophila takahashii GN=CecC PE=2 SV=1 CECC_DROOR - Cecropin-C OS=Drosophila orena GN=CecC PE=2 SV=1 CECC_DROTE - Cecropin-C OS=Drosophila teissieri GN=CecC PE=2 SV=1	99.0	[0..1]	[63..1]
gi\|2582315 - gi\|2582315\|gb\|AAB82516.1\| cecropin C [Drosophila mauritiana]	99.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFNKIFVFV ALILAISLGN SEAGWLRKLG KKIERIGQHT RDASIQVLGI AQQAANVAAT  60
   61 ARG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.898	0.089	defense response to Gram-negative bacterium	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits