YRC Public Data Repository - Protein Structure Prediction

Protein:	Mlc2-PA
Organism:	Drosophila melanogaster
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Mlc2-PA.

Description	E-value	Query Range	Subject Range
gi\|125545976 - gi\|125545976\|gb\|EAY92115.1\| hypothetical protein OsI_13822 [Oryza sativa Indica Group] gi\|115455805, gi... - gi\|50355719\|gb\|AAT75244.1\| putative calcium-dependent protein kinase [Oryza sativa (japonica cultiva...	155.0	[0..1]	[212..360]
gi\|3320104, gi\|1... - pir\|\|T02784 calcium-dependent protein kinase (EC 2.7.1.-) - maize (strain W64A), gi\|3320104\|emb\|CAA...	148.0	[0..1]	[212..380]
gi\|16215467 - gi\|16215467\|emb\|CAC82998.1\| calcium-dependent protein kinase 2 [Nicotiana tabacum]	147.0	[0..1]	[214..344]
gi\|16215475 - gi\|16215475\|emb\|CAC83000.1\| calcium-dependent protein kinase 2 [Nicotiana benthamiana]	145.0	[0..1]	[214..344]
gi\|7434364, gi\|1... - pir\|\|T09940 calcium-dependent protein kinase (EC 2.7.1.-) CDPK - pumpkin, gi\|1899175\|gb\|AAB49984.1\| ...	145.0	[0..1]	[214..337]
CDPK2_ARATH - Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1	145.0	[0..1]	[213..413]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEKKKVKK KKTKEEGGTS ETASEAASEA ATPAPAATPA PAASATGSKR ASGGSRGSRK  60
   61 SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.39794
Match:	1a06A
Description:	CALMODULIN-DEPENDENT PROTEIN KINASE FROM RAT
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [63-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAGSSVFSVF SQKQIAEFKE AFQLMDADKD GIIGKNDLRA AFDSVGKIAN DKELDAMLGE  60
   61 ASGPINFTQL LTLFANRMAT SGANDEDEVV IAAFKTFDND GLIDGDKFRE MLMNFGDKFT 120
  121 MKEVDDAYDQ MVIDDKNQID TAALIEMLTG KGEEEEEEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2f2oA
Description:	Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits