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View Structure Prediction Details

Protein: dgt1-PA
Organism: Drosophila melanogaster
Length: 484 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dgt1-PA.

Description E-value Query
Range
Subject
Range
gi|54637381, gi|... - gi|54637381|gb|EAL26783.1| GA14774-PA [Drosophila pseudoobscura], gi|125772755|ref|XP_001357649.1| G...
575.0 [0..1] [484..1]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFSPNQLR QCARFTGTPC TPDKEHQLRE QIHSELVKIK YCANPTYECS LMRIEGYEYC  60
   61 IRHILRDPRS NFRQCSHVYS NGRKCINAVA KYDNKKELIL TTLCFEH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRQTQLQKTH MNVGRIRSRV ETNETLLHSL SSHINVEDIK PEVKKIERDD DEIDVVSPHV  60
   61 TPFVTQDHRN SIGHVVESSR KRRRILDYAS DSSSNDADPP CLRNTAQDIE FYESDHESID 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [228-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEDDDPLKHA GVFTRAEAVK IAETKLIKLQ GLYREQISYL QNVLRQRRRK YLHDIRRERE  60
   61 LYCSIHDQLK DTPHERKLYE QLKALNSYHR RQGVEAVLYK KLKEKRARDA LYAAKSSSNP 120
  121 KCVFTEGGVK CGERTLPCCK HCRKHILEDK RQVLFRACGV ERSGVVCQEP VASILEDSSC 180
  181 VLHLTVAPAK RQYIQKKCES ETEEEETQST SLISTIKKEE EDPSDKLYTS QALNVTTAHG 240
  241 EDNKGDVKPR EYAPNRS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle