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View Structure Prediction Details

Protein: Cpsf100-PA
Organism: Drosophila melanogaster
Length: 756 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cpsf100-PA.

Description E-value Query
Range
Subject
Range
gi|73962299 - gi|73962299|ref|XP_848582.1| PREDICTED: similar to cleavage and polyadenylation specific factor 2 is...
516.0 [0..1] [756..1]

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Predicted Domain #1
Region A:
Residues: [1-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIKLHTI SGAMDESPPC YILQIDDVRI LLDCGWDEKF DANFIKELKR QVHTLDAVLL  60
   61 SHPDAYHLGA LPYLVGKLGL NCPIYATIPV FKMGQMFMYD LYMSHFNMGD FDLFSLDDVD 120
  121 TAFEKITQLK YNQTVSLKDK GYGISITPLN AGHMIGGTIW KIVKVGEEDI VYATDFNHKK 180
  181 ERHLSGCELD RLQRPSLLIT DAYNAQYQQA RRRARDEKLM TNILQTVRNN GNVLIAVDTA 240
  241 GRVLELAHML DQLWKNKESG LMAYSLALLN NVSYNVIEFA KSQIEWMSDK LTKAFEGARN 300
  301 NPFQFKHIQL CHSLADVYKL PAGPKVVLAS TPDLESGFTR DLFVQWASNA NNSIILTTRT 360
  361 SPGTLAMELV ENCAPGKQIE LDVRRRVDLE GAELEEYLRT QGEKLNPLIV KPDVEEESSS 420
  421 ESEDDIEMSV ITGKHDIVVR PEGRHHSGFF KSNKRHHVMF PY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.221849
Match: 2i7tA
Description: No description for 2i7tA was found.

Predicted Domain #2
Region A:
Residues: [463-659]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEEKVKCDEY GEIINLDDYR IADATGYEFV PMEEQNKENV KKEEPGIGAE QQANGGIVDN  60
   61 DVQLLEKPTK LISQRKTIEV NAQVQRIDFE GRSDGESMLK ILSQLRPRRV IVIHGTAEGT 120
  121 QVVARHCEQN VGARVFTPQK GEIIDVTSEI HIYQVRLTEG LVSQLQFQKG KDAEVAWVDG 180
  181 RLGMRVKAIE APMDVTV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.73
Match: 2i7xA
Description: No description for 2i7xA was found.

Predicted Domain #3
Region A:
Residues: [660-756]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQDASVQEGK TLTLETLADD EIPIHNSVLI NELKLSDFKQ TLMRNNINSE FSGGVLWCSN  60
   61 GTLALRRVDA GKVAMEGCLS EEYYKIRELL YEQYAIV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle