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View Structure Prediction Details

Protein: gi|24650716, gi|...
Organism: Drosophila melanogaster
Length: 956 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24650716, gi|....

Description E-value Query
Range
Subject
Range
gi|73987536 - gi|73987536|ref|XP_533958.2| PREDICTED: similar to transcription elongation factor B polypeptide 3 b...
498.0 [0..22] [954..762]

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Predicted Domain #1
Region A:
Residues: [1-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTGLFKG FLCPYFDGQD AASCKRPFCH FKHARKDELE AAPPAEPSPV PKYKPAPKLL  60
   61 SLPLPQITLC APRKKSNLEY HPEKPALDAS PAKKKQEASV DSAPKYVPGQ PSVTNGEEYD 120
  121 DWQAVLEKEI DEQMQVEIEE QVQNNDEEQK IDTVAENEED QENTQLTDAR DSHEKDRKPS 180
  181 KERERDIEKK KIRELKREKI KDRDRDRDRD REKDKEKSKE RDREKEKNDR DKRKSSHSDK 240
  241 ERSKERNTSS SSSSKHKSSS SSSSSKKSSS SDKHRDDKSS SSRHKSSSSS SSSKSHHHKS 300
  301 SSSSSRSKTK RSSSSSKSAG TSKSEPEADK DTEAAVLTPA EPMDDLDDMD FDFEAATAAL 360
  361 QKRRVAHENA DKITPHLAPS AAMRKPNHVR NAMQAIFNRR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [401-744]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AELRRQEKLQ AEASAEQVRQ AQERVRQAQE ELRQAKVNSN LTPLISRSAL TPPVRSARSI  60
   61 APVANIVAIA RAKKKIEELQ AEKKPAFTPA QSFKGAGRVA HKPTAALDKA APVSNAEKPT 120
  121 VLDPSSSKIS YNVRIQYYEM MVRHCTVIYP QLADAWERAQ VEELTVFKKC NTPAIYKNSC 180
  181 MLAINKLRKE ALEAGNKPSV ACKTVSHEMM LGGKRALTTS WSVEKKGKLS SLGNGEPFDA 240
  241 LDAEKAYKMV FDLRLTEEQL VENGYPRPGD KRGSAVIRAC RPNRRPNQKE RYCSRCGKVF 300
  301 SLDIYEHQSF DMCNYHPKST GYRRGFTDHQ HRCCQQPAGT PGCT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 1pqvS
Description: RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [745-956]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YANYHVSDYY DPEKLTCFVK TIERGEEFVP TKKDIYALDC EMCYTTHGIE LTRVTVVDIN  60
   61 GRSVYDALVK PDNQIVDYNT TWVNVAFRLF RINLQYSDFS YSGITEAMLS NETRTIRDVQ 120
  121 AVLMSMFHAK TVLVGHSLES DLKALKLIHD VVVDTSVLFP HKMGPPKKRA LKTLCIENLK 180
  181 RIIQESEAGH DSAEDAEVCI QLIKYYLRNK IS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.09691
Match: 1wljA
Description: human ISG20
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.485910322334531 bayes_pls_golite062009
nuclease activity 0.318985867549147 bayes_pls_golite062009
hydrolase activity 0.278122673215692 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.251364069223802 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle