| Protein: | boss-PA |
| Organism: | Drosophila melanogaster |
| Length: | 896 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for boss-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
916.0 | [0..1] | [896..1] |
|
Region A: Residues: [1-297] |
1 11 21 31 41 51
| | | | | |
1 MKVMDALQSG RRKPLPVALL CILVTVFCVL ECHGADLTSP TKKSAPLRIT KPQPTSQQAK 60
61 PISITTRAPT TVASTTDDEV SSSVDGQLAP LISSTTEGPS SGTTASLVPE ICLNGLQLTV 120
121 NSADEGTVIR KQEEFVKILE GDVVLSVLTK DPDSALFVIN RVNQANLIMA DFEIGIRAIS 180
181 IDNASLAENL LIQEVQFLQQ CTTYSMGIFV DWELYKQLES VIKDLEYNIW PIPGTRAHLF 240
241 PKVAHLLHQM PWGEKIASVE IATETLEMYN EFMEAARQEH MCLMHFKSDD NVYIMFG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [298-518] |
1 11 21 31 41 51
| | | | | |
1 NKLASHFKEN GTLFSVPTDR TDDEFLADLP NRAFVLMENE IDLSTAVELD ATPTALDEIL 60
61 IGKSVLPSRV LSFAGSIIDL MNWLRGSLSK HCKRGEEHDL YVLESCFNFL NFIEDWRTSE 120
121 YRQAHDTAEI LSLLLMRKLG TAMNFQMYQK KVLTLDKITG ESRTELREIA SQNFVTNVTT 180
181 YYHYNRDNHT SLELKTKFGQ VFNCQYSAGD NRRYPFLFDG E
|
| Detection Method: | |
| Confidence: | 51.154902 |
| Match: | 2e4uA |
| Description: | No description for 2e4uA was found. |
|
Region A: Residues: [519-808] |
1 11 21 31 41 51
| | | | | |
1 SVMFWRIKMD TWVATGLTAA ILGLIATLAI LVFIVVRISL GDVFEGNPTT SILLLLSLIL 60
61 VFCSFVPYSI EYVGEQRNSH VTFEDAQTLN TLCAVRVFIM TLVYCFVFSL LLCRAVMLAS 120
121 IGSEGGFLSH VNGYIQAVIC AFSVVAQVGM SVQLLVVMHV ASETVSCENI YYGRWLWGLL 180
181 AYDFALLCCV GALIPSIYRS QRNYREGILI VIGSVLIMVI WVAWIALSLF GDEWRDAAIP 240
241 LGLQASGWAV LVGILIPRTF LIVRGIERSD IAQALPSLTS LAFAQNNQYS
|
| Detection Method: | |
| Confidence: | 1.32 |
| Match: | 1f88A |
| Description: | Rhodopsin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [809-896] |
1 11 21 31 41 51
| | | | | |
1 SEQSVYECVN PAMRHCSQDE VNHQSPSEIP TLPLRGGGPR RQQFFANLRQ ANANINPQRP 60
61 PPRPQQSPSR SSVSSLPPSP DHNKITRF
|
| Detection Method: | |
| Confidence: | 1.07 |
| Match: | 1rw6A |
| Description: | human APP core domain |
Matching Structure (courtesy of the PDB): |
|
