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View Structure Prediction Details

Protein: twin-PC
Organism: Drosophila melanogaster
Length: 567 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twin-PC.

Description E-value Query
Range
Subject
Range
gi|17391192, gi|... - gi|21450299|ref|NP_659159.1| CCR4-NOT transcription complex, subunit 6-like isoform 1 [Mus musculus]...
gi|149046868, gi... - gi|157823321|ref|NP_001101825.1| CCR4-NOT transcription complex, subunit 6-like [Rattus norvegicus],...
419.0 [0..34] [567..11]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCIFKKRDAY HQAVIMKGNH YKMSRNKDKY DSANRRQQIF LSQEDIAAGK KTNWSGLEIT  60
   61 GCVRNISPSL WEFEHLTALY LNDNQLLRLP ADVGMLTSLR TLDLSSNKLR SLPAELGELI 120
  121 QLRELLLNNN FLRVLPYEIG KLFHLVILGL MGNPLQKEFM NIYNEPNGTQ KLLTYMLDNL 180
  181 SFTVNPPPQR PWLPLAKPNK TRPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.522879
Match: 2o6qA
Description: No description for 2o6qA was found.

Predicted Domain #2
Region A:
Residues: [205-415]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CIFTVMCYNV LCDKYATRQM YGYCPSWALC WEYRKKSIID EIRHYAADII SLQEIETEQF  60
   61 YHFFLPELKN DGYEGIFSPK SRAKTMSELE RKYVDGCAIF FRASKFTLIK ESLIEFNQLA 120
  121 MANAEGSDNM LNRVMPKDNI GLAALLKVKE NAWEPMSEVT QISQPLLVCT AHIHWDPEFC 180
  181 DVKLIQTMML SNELKTIIDE ASHSFRPGHK N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 2v9sA
Description: No description for 2v9sA was found.

Predicted Domain #3
Region A:
Residues: [416-567]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNAVQLLLC GDFNSLPDSG VVEFLGKGRV SMDHLDFKDM GYKSCLQRLL SNDTNEFTHS  60
   61 FKLASAYNED IMPHTNYTFD FKGIIDYIFY TKTGMVPLGL LGPVSNDWLR ENKVVGCPHP 120
  121 HIPSDHFPLL VELELMHTAS QQAPPNGLIN RR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.63
Match: 2ddrA
Description: No description for 2ddrA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle