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View Structure Prediction Details

Protein: twin-PA, twin-PE...
Organism: Drosophila melanogaster
Length: 552 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twin-PA, twin-PE....

Description E-value Query
Range
Subject
Range
gi|17391192, gi|... - gi|21450299|ref|NP_659159.1| CCR4-NOT transcription complex, subunit 6-like isoform 1 [Mus musculus]...
gi|149046868, gi... - gi|157823321|ref|NP_001101825.1| CCR4-NOT transcription complex, subunit 6-like [Rattus norvegicus],...
407.0 [0..19] [552..11]

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Predicted Domain #1
Region A:
Residues: [1-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGNHYKMSR NKDKYDSANR RQQIFLSQED IAAGKKTNWS GLEITGCVRN ISPSLWEFEH  60
   61 LTALYLNDNQ LLRLPADVGM LTSLRTLDLS SNKLRSLPAE LGELIQLREL LLNNNFLRVL 120
  121 PYEIGKLFHL VILGLMGNPL QKEFMNIYNE PNGTQKLLTY MLDNLSFTVN PPPQRPWLPL 180
  181 AKPNKTRPAC IFTVMCYNVL CDKYATRQMY GYCPSWALCW EYRKKSIIDE IRHYAADIIS 240
  241 LQEIETEQFY HFFLPELKND GYEGIFSPKS RAKTMSELER KYVDGCAIFF RASKFTLIKE 300
  301 SLIEFNQLAM ANAEGSDNML NRVMPKDNIG LAALLKVKEN AWEPMSEVTQ ISQPLLVCTA 360
  361 HIHWDPEFCD VKLIQTMMLS NELKTIIDEA SHSFRPGHKN DSNAVQLLLC 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #2
Region A:
Residues: [411-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDFNSLPDSG VVEFLGKGRV SMDHLDFKDM GYKSCLQRLL SNDTNEFTHS FKLASAYNED  60
   61 IMPHTNYTFD FKGIIDYIFY TKTGMVPLGL LGPVSNDWLR ENKVVGCPHP HIPSDHFPLL 120
  121 VELELMHTAS QQAPPNGLIN RR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.2
Match: 2ddrA
Description: No description for 2ddrA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle