YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: mRpL45-PA
Organism: Drosophila melanogaster
Length: 361 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mRpL45-PA.

Description E-value Query
Range
Subject
Range
gi|54637660|gb|E... - GA19976-PA [Drosophila pseudoobscura], GA19976 [Drosophila pseudoobscura pseudoobscura]
gi|54637660, gi|... - gi|54637660|gb|EAL27062.1| GA19976 [Drosophila pseudoobscura pseudoobscura], gi|125773335|ref|XP_001...
348.0 [0..1] [361..1]

Back

Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLASAKTC LKLLQVMPGV QQAALLPGGG LGVLASPLQN LIQMQQVRHR QTKHWKPEFK  60
   61 RLRKLKFVKM DLPNLREKQE DITKEEMRSR MKERGVLP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRPWMERPFH ISCTGGIFEA YVPPEGDGKK SIISTSGAKQ KLEFLEKKSK SLMAVRKIRS  60
   61 YDENFSSDDF GAEAQDIYIQ AHTHMAAKDK YKIREFVSER CYPEMMHNVK DKTIRWKFLQ 120
  121 SLEPPRVVHA RVTEVITKEN QFAQVTVRFH SQQMLAIYDR FGRLMHGSEI ITKDVLEYVV 180
  181 FEKHISNEYG KWRLHDKIIP DWLPAKQPAP ITYRLIEDAE EPPKELSAGD AEVKQVDSVG 240
  241 EQSKEQLPLA TPVESHTKPS LAI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.0
Match: 2cw9A
Description: Crystal structure of human Tim44 C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle