YRC Public Data Repository - Protein Structure Prediction

Protein:	FBpp0307185, Cchl-PA
Organism:	Drosophila melanogaster
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0307185, Cchl-PA.

Description	E-value	Query Range	Subject Range
gi\|54638717, gi\|... - gi\|54638717\|gb\|EAL28119.1\| GA19303-PA [Drosophila pseudoobscura], gi\|125775537\|ref\|XP_001358976.1\| G...	419.0	[0..1]	[278..1]
gi\|58380235, gi\|... - gi\|58380235\|ref\|XP_310401.2\| AGAP003843-PA [Anopheles gambiae str. PEST], gi\|55243971\|gb\|EAA06088.2\|... AGAP003843-PA - cytochrome c heme-lyase\|protein_coding\|2R:44296234:44297070:-1\|gene:AGAP003843	389.0	[0..6]	[267..17]
gi\|94469118 - gi\|94469118\|gb\|ABF18408.1\| holocytochrome c synthetase [Aedes aegypti]	383.0	[0..1]	[267..11]
gi\|190690255, gi... - gi\|190691629\|gb\|ACE87589.1\| holocytochrome c synthase (cytochrome c heme-lyase) protein [synthetic c... HCCS - holocytochrome c synthase	374.0	[0..11]	[262..1]
gi\|109129906, gi... - gi\|109129912\|ref\|XP_001094439.1\| PREDICTED: holocytochrome c synthase (cytochrome c heme-lyase) isof...	373.0	[0..11]	[262..1]
gi\|109511686, gi... - gi\|109511686\|ref\|XP_001065465.1\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocyto...	368.0	[0..1]	[262..1]
CCHL_MOUSE - Cytochrome c-type heme lyase OS=Mus musculus GN=Hccs PE=1 SV=2	368.0	[0..11]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNTAITRVQ MEATKSVPVD HAKYMSGSGA PPPECPMHQK HGDAKSASAV PPHPKMQAAS  60
   61 ECPVQHDNSD VNPLNMMPPA NQQPAADQPF PLPTDRQTST IPKVTEDGSV QFWQYPSQQM 120
  121 FWNAMLRKGW RWKTEDVSQK DMGDIIRIHN ANNEQAWQEV LKWEALHAKE CGNPRLKSFG 180
  181 GKAKDFSPRA RFRSWLGYEL PFDRHDWIVD RCGKDVRYVI DYYDGGLVDK DYRFALLDVR 240
  241 PAMDSVDNVW DRMRVAYMRW KYELFEKFGS ADGGKVTAGS D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits