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View Structure Prediction Details

Protein: mod(mdg4)-PT
Organism: Drosophila melanogaster
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mod(mdg4)-PT.

Description E-value Query
Range
Subject
Range
gi|7378705 - gi|7378705|emb|CAB85487.1| mod(mdg4)67.2 [Drosophila melanogaster]
425.0 [0..1] [610..1]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDEQFSLC WNNFNTNLSA GFHESLCRGD LVDVSLAAEG QIVKAHRLVL SVCSPFFRKM  60
   61 FTQMPSNTHA IVFLNNVSHS ALKDLIQFMY CGEVNVKQDA LPAFISTAES LQIKGLTDND 120
  121 PAPQPPQESS PPPAAPHVQQ QQIPAQRVQR QQPRASARYK IETVDDGLGD EKQSTTQIVI 180
  181 QTTAAPQATI V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.221849
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [192-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQQQPQQAAQ QIQSQQLQTG TTTTATLVST NKRSAQRSSL TPASSSAGVK RSKTSTSANV  60
   61 MDPLDSTTET GATTTAQLVP QQITVQTSVV SAAEAKLHQQ SPQQVRQEEA EYIDLPMELP 120
  121 TKSEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [317-529]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSEDHGDAA GDAEGTYVED DTYGDMRYDD SYFTENEDAG NQTAANTSGG GVTATTSKAV  60
   61 VKQQSQNYSE SSFVDTSGDQ GNTEAQAATS ASATKIPPRK RGRPKTKVED QTPKPKLLEK 120
  121 LQAATLNEEA SEPAVYASTT KGGVKLIFNG HLFKFSFRKA DYSVFQCCYR EHGEECKVRV 180
  181 VCDQKRVFPY EGEHVHFMQA SDKSCLPSQF MPG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #4
Region A:
Residues: [530-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGVISSLSP SKELLMKNTT KLEEADDKED EDFEEFEIQE IDEIELDEPE KTPAKEEEVD  60
   61 PNDFREKIKR RLQKALQNKK K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle