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View Structure Prediction Details

Protein: FBpp0306056, Snmp-PA
Organism: Drosophila melanogaster
Length: 551 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0306056, Snmp-PA.

Description E-value Query
Range
Subject
Range
gi|114647758 - gi|114647758|ref|XP_509475.2| PREDICTED: scavenger receptor class B, member 1 [Pan troglodytes]
571.0 [0..1] [540..152]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVPRVKLLM GSGAMFVFAI IYGWVIFPKI LKFMISKQVT LKPGSDVREL WSNTPFPLHF  60
   61 YIYVFNVTNP DEVSEGAKPR LQEVGPFVFD EWKDKYDLED DVVEDTVSFT MRNTFIFNPK 120
  121 ESLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTGEEEIILP HPIMLPGGIS VQREKAAMME LVSKGLSIVF PDAKAFLKAK FMDLFFRGIN  60
   61 VDCSSEEFSA KALCTVFYTG EIKQAKQVNQ THFLFSFMGQ ANHSDSGRFT VCRGVKNNKK 120
  121 LGKVVKFADE PEQDIWPDGE CNTFVGTDST VFAPGLKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDGLWAFTPD LCRSLGAYYQ HKSSYHGMPS MRYTLDLGDI RADEKLHCFC EDPEDLDTCP  60
   61 PKGTMNLAAC VGGPLMASMP HFYL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [367-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDPKLVADVD GLNPNEKDHA VYIDFELMSG TPFQAAKRLQ FNLDMEPVEG IEPMKNLPKL  60
   61 ILPMFWVEEG VQLNKTYTNL VKYTLFLGLK INSVLRWSLI TFSLVGLMFS AYLFYHKSDS 120
  121 LDINSILKDN NKVDDVASTK EPLPSANPKQ SSTVHPVQLP NTLIPGTNPA TNPATHHKME 180
  181 HRERY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle